View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_low_19 (Length: 349)
Name: NF4704_low_19
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 50707197 - 50707530
Alignment:
| Q |
1 |
ttatataatattggaagttgacgaggaacatgaattcatgtgaatctctttcccttgcaaagatgcatctaaattaagcttcaattttttcaaagaagtc |
100 |
Q |
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| T |
50707197 |
ttatataatattggaagttgacgaggaacatgaattcatgtgaatctctttcccttgcaaagatgcatctaaattaagcttcaattttttcaaagaagtc |
50707296 |
T |
|
| Q |
101 |
ttaaattgcgcaagagatgccaaagccatatcatcaatagaatgatcccaccaagaaggaaggcatgaactactcttgtttgtctcttttacagcttgta |
200 |
Q |
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| T |
50707297 |
ttaaattgcttaagagattccaaagccatatcatcaatagaatgatcccaccaagaaggaaggcatgaactactgttgtttgtctcttttacagcttgta |
50707396 |
T |
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| Q |
201 |
aattattcttctcttctttcagccgttcttgaactgtcacatgttgaagccttgaggtttcaattgtgtactcatcttgcttccctttttcagtgttgat |
300 |
Q |
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| T |
50707397 |
aattattcttctcttctttcagccgttcttgaattgtctcatgttgaagccttgaggtttcaattgtgtactcatcttgcttccctttttcagtgttgat |
50707496 |
T |
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| Q |
301 |
gactgggttttccttatcgaaaaagtgtttaatg |
334 |
Q |
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| T |
50707497 |
gactgggttttccttatcgaaaaagtgtttaatg |
50707530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 53 - 334
Target Start/End: Original strand, 8167179 - 8167463
Alignment:
| Q |
53 |
ccttgcaaagatgcatctaaattaagcttcaattttttcaaagaagtcttaaattgcgcaagagatgccaaagccatatcatcaatagaatgatcccacc |
152 |
Q |
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| T |
8167179 |
ccttgcaaggatgcatctaaattaagcttcaattttaccaaagaagtcttaaattgctcaagagattccaaagccatatcatcaatagaatgaccccacc |
8167278 |
T |
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| Q |
153 |
aagaaggaaggcatgaactactcttgtttgtctcttttacagcttgtaaattattcttctcttctttcagccgttcttgaactgtcacatgttgaagcct |
252 |
Q |
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| T |
8167279 |
agcaagaaaaacatgaactactcttgtttctctcttttacaccttctaaataattattctcttctttcagccgttcttcaattgcctcatgttgaaacct |
8167378 |
T |
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| Q |
253 |
tgaggtttcaattgtgtactc---atcttgcttccctttttcagtgttgatgactgggttttccttatcgaaaaagtgtttaatg |
334 |
Q |
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| T |
8167379 |
taaggtttcaactacgccctcatgatcctgcttccttttgtcagcgtcgatgactgggttttccctatcgagaaagtgtttaatg |
8167463 |
T |
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