View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4704_low_2 (Length: 612)
Name: NF4704_low_2
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 187 - 593
Target Start/End: Complemental strand, 48705107 - 48704701
Alignment:
| Q |
187 |
gctatataacgataaaccaatgtggacaaggttgtggaggagattaaggttatgtcgtggagatgggggttaagtcggttggaaacgacggcttgcttgt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48705107 |
gctatataacgataaaccaatgtggacaaggttgtggaggagattaaggttatgtcgtggagatgggggttaagtcggttggaaacgacggcttgcttgt |
48705008 |
T |
|
| Q |
287 |
tttatgagtggcaatggaatcctattgagtgcttaaggcggtagtgtttttgctggactgttgtgctctgagattgaagctgcggtattcggcacttgcg |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48705007 |
tttatgagtggcaatggaatcctattgagtgcttgaggcagtagtgtttttgctggactgttgtgctctgagattgaagctgcggtattcggcacttgcg |
48704908 |
T |
|
| Q |
387 |
ggacagtttttggtgctgctgtcagtgctgtatatgatagcatcaattttctggttttttgttgcagcaggttcggctgctgttttctgttgttagccgc |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48704907 |
ggacagtttttggtgctgctgtcagtgctgtatatgacagcatcaattttctggttttttgttgcagcaggttcggctgctgttttctgttgttagccgc |
48704808 |
T |
|
| Q |
487 |
ccagttttggttggtttagtgttctgggcgtttgttttgggggttttccagtatgtcggtgccctttgtattattcttgcccgcgagtttgttgtgcttc |
586 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48704807 |
ccagttttggttggtttagtgttctgggtgtttgttttgggggttttccagtatgtcggtgccctttgtattattcttgccaacgagtttgttgtgcttc |
48704708 |
T |
|
| Q |
587 |
ttgtaca |
593 |
Q |
| |
|
||||||| |
|
|
| T |
48704707 |
ttgtaca |
48704701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 45364754 - 45364695
Alignment:
| Q |
105 |
tggtatatcttcttttgaaatgggaatttcttttgcctcccaataattaggatcctgttt |
164 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| |||||| ||||| ||| || |||||| |
|
|
| T |
45364754 |
tggtatatcttcttttgaagtggaaatttctttggcctcctaataactagcatactgttt |
45364695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 45375994 - 45375935
Alignment:
| Q |
105 |
tggtatatcttcttttgaaatgggaatttcttttgcctcccaataattaggatcctgttt |
164 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| |||||| ||||| ||| || |||||| |
|
|
| T |
45375994 |
tggtatatcttcttttgaagtggaaatttctttggcctcctaataactagcatactgttt |
45375935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 45383573 - 45383514
Alignment:
| Q |
105 |
tggtatatcttcttttgaaatgggaatttcttttgcctcccaataattaggatcctgttt |
164 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| |||||| ||||| ||| || |||||| |
|
|
| T |
45383573 |
tggtatatcttcttttgaagtggaaatttctttggcctcctaataactagcatactgttt |
45383514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 235 - 396
Target Start/End: Complemental strand, 42662051 - 42661890
Alignment:
| Q |
235 |
gttatgtcgtggagatgggggttaagtcggttggaaacgacggcttgcttgttttatgagtggcaatggaatcctattgagtgcttaaggcggtagtgtt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| | ||||||||||| ||||||||||||||||| ||||| |||||||| ||||||| | |
|
|
| T |
42662051 |
gttatgtcgtggagatgggggttaagtcgattgcaaacgtctgcttgcttgttctatgagtggcaatggaaccctatagagtgcttgttgcggtag-ggc |
42661953 |
T |
|
| Q |
335 |
tttgctggactgttgtgctct-gagattgaagctgcggtattcggcacttgcgggacagtttt |
396 |
Q |
| |
|
|||| ||| |||||||||| | ||| ||||||||| ||||||| || | |||||||| ||||| |
|
|
| T |
42661952 |
tttggtggtctgttgtgctttcgaggttgaagctgtggtattcagcgcgtgcgggactgtttt |
42661890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 235 - 320
Target Start/End: Original strand, 50230411 - 50230496
Alignment:
| Q |
235 |
gttatgtcgtggagatgggggttaagtcggttggaaacgacggcttgcttgttttatgagtggcaatggaatcctattgagtgctt |
320 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| | ||||||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
50230411 |
gttatgtcgtggagatgggggttaagtcgattgcaaacgtctgcttgcttgttctatgagtggcaatggaaccctatagagtgctt |
50230496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 235 - 439
Target Start/End: Original strand, 42660374 - 42660577
Alignment:
| Q |
235 |
gttatgtcgtggagatgggggttaagtcggttggaaacgacggcttgcttgttttatgagtggcaatggaatcctattgagtgcttaaggcggtagtgtt |
334 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| ||||| | ||||||||||| ||||||||||||||||| ||| ||||||| ||||||| | |
|
|
| T |
42660374 |
gttatgtcctggagatgggggttaagtcgattgcaaacgtctgcttgcttgttctatgagtggcaatggaacgatataaagtgcttgttgcggtag-ggc |
42660472 |
T |
|
| Q |
335 |
tttgctggactgttgtgctct-gagattgaagctgcggtattcggcacttgcgggacagtttttggtgctgctgtcagtgctgtatatgatagcatcaat |
433 |
Q |
| |
|
|||| ||| |||||||||| | ||| |||||||| |||||||||| | |||| ||| | ||||||||||||| | | || ||||||||| ||||||| | |
|
|
| T |
42660473 |
tttggtggtctgttgtgctttcgaggctgaagctgtggtattcggcgcgtgcgagactg-ttttggtgctgctattactgttgtatatgacagcatcagt |
42660571 |
T |
|
| Q |
434 |
tttctg |
439 |
Q |
| |
|
|||||| |
|
|
| T |
42660572 |
tttctg |
42660577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 9210007 - 9209931
Alignment:
| Q |
232 |
aaggttatgtcgtggagatgggggttaagtcggttggaaacgacggcttgcttgttttatgagtggcaatggaatcc |
308 |
Q |
| |
|
|||||| |||||||||||||| | |||||||||||| || | |||| || ||||| ||||||||||| |||||||| |
|
|
| T |
9210007 |
aaggttctgtcgtggagatggtgtttaagtcggttgcaagggccggcgtggttgttctatgagtggcactggaatcc |
9209931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University