View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_low_20 (Length: 344)
Name: NF4704_low_20
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 244 - 326
Target Start/End: Original strand, 9533871 - 9533953
Alignment:
| Q |
244 |
ttcaatctttttccagtataggatcaaatggggcaaaagggtggatcaagattaaagagagagaaactatagcgtcatggtac |
326 |
Q |
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| T |
9533871 |
ttcaatctttttccagtatagaatcaaatggggcaaaagggtggatcaagattaaagagagagaaactatagcgtcatggtac |
9533953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 9533632 - 9533675
Alignment:
| Q |
14 |
catcaacctcatcaccagacatccttaaatccttcaaaatccac |
57 |
Q |
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| T |
9533632 |
catcaacctcatcaccagacatccttaaatccttcaaaatccac |
9533675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 9533746 - 9533784
Alignment:
| Q |
119 |
gatgggttgttcctaaaccaaccctaaattggtgtaagg |
157 |
Q |
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| T |
9533746 |
gatgggttgttcctaaaccaaccctaaattggtgtaagg |
9533784 |
T |
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