View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_low_27 (Length: 299)
Name: NF4704_low_27
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 42836472 - 42836181
Alignment:
| Q |
1 |
tctaagaaacgttaaaactaataatttttt-gaacacttacatgaatttttcgacatgtgtcaaacaagtgtcatacgggtgttagacaccaacacatgt |
99 |
Q |
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| T |
42836472 |
tctaagaaacgttaaaactaataatttttttgaacacttacatgaatttttcgacatgtgtcaaacaagtgtcatacgggtgttagacaccaacacatgt |
42836373 |
T |
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| Q |
100 |
cgaataccatgtcacgtttaattctataggtggttgtgtctcgtaatgcaacaagaaattaatcatattatccgaataaatttctgtttgcataataatt |
199 |
Q |
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| T |
42836372 |
cgaataccatgtcacgtttaattctataggtggttgtgtctcgtaatgcaacaagaaattaatcatattatccgaataaatttctgtttgcataataatt |
42836273 |
T |
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| Q |
200 |
gtagagatcgtgcactgccatcaaacttagcgtcctccaattttacaaaggttcagggatatgagcctttaaatgtaccaggtaaggatatt |
291 |
Q |
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| T |
42836272 |
gtagagatcgtgcactgccatcaaacttagcgtcctcccattttacaaaggttcagggatatgagcctttaaatgtaccaggtaaggatatt |
42836181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 42820280 - 42820232
Alignment:
| Q |
217 |
ccatcaaacttagcgtcctccaattttacaaaggttcagggatatgagc |
265 |
Q |
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| T |
42820280 |
ccatcaaacttggtgtcctcccattttacaaaggtccagggatatgagc |
42820232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 275
Target Start/End: Complemental strand, 42503526 - 42503492
Alignment:
| Q |
241 |
tttacaaaggttcagggatatgagcctttaaatgt |
275 |
Q |
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| T |
42503526 |
tttacaaaggtccagggatatgagcctttaaatgt |
42503492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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