View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_low_3 (Length: 559)
Name: NF4704_low_3
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Complemental strand, 31406710 - 31406263
Alignment:
| Q |
19 |
aattggccattattaactgttttggtgttgaaattgcagggtccaacatttggagcaatgatgatttcaggacagaaggcagctcatttggccttgagag |
118 |
Q |
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| T |
31406710 |
aattggccattattaactgttttggtgttgaaattgcagggtccaacatttggagcaatgatgatttcaggacagaaggcagctcatttggccttgagag |
31406611 |
T |
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| Q |
119 |
cactgggacttccaaatgttgtggatcatgcaagaaatattcaccctgagcttgtcctagctgctgctgattctgctgatattgcagaagcttaattatt |
218 |
Q |
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| T |
31406610 |
cactgggacttccaaatgctgtggatcatgcaggaaatattcaccctgagcttgtcctagctgctgctgattctgctgatattgcagaagcttaattatt |
31406511 |
T |
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| Q |
219 |
gttaccatattaactatttagttaatagtatcgaagtgctagtagccagaaataaaactttgtctttgttgtttgttagtcactattatgggcaggttga |
318 |
Q |
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| T |
31406510 |
gttaccatattaactatttagttaatagtatcgaagtgctagtaaccagaaataaaactttgtctttgttgtttgttagtagtgattatgggcaggttga |
31406411 |
T |
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| Q |
319 |
tgtgactctctatgagcttttttgtcattaatatgaatgaatgtgtttgccaactccttgcatttctttctcctccactaatatttatgattgtttttta |
418 |
Q |
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| T |
31406410 |
tgtgactctgtatgagcttttttgtcattaatatgaatgaatgtgtttgccaactccttgcatttctttctcctccactaatatttatgattgtttttta |
31406311 |
T |
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| Q |
419 |
atgaaaagggaatactattaaggggacagaattcccccaatcctccca |
466 |
Q |
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| T |
31406310 |
atgaaaagggaatactattaaggggacagaattcccccaatcctccca |
31406263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 464 - 549
Target Start/End: Complemental strand, 31405891 - 31405806
Alignment:
| Q |
464 |
ccaactggatatttctgcatcttagatagggtttcctactattttcctctatactagcacttgatcaaggccttcacatttggtct |
549 |
Q |
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| T |
31405891 |
ccaactggatatttctgcatcttagatagggtttcctactattttcctctatactagcacttgatcaaggccttcacatttggtct |
31405806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 47480653 - 47480594
Alignment:
| Q |
56 |
agggtccaacatttggagcaatgatgatttcaggacagaaggcagctcatttggccttga |
115 |
Q |
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| T |
47480653 |
agggtccaacatttggggcaatgatgatatcaggacagaaagctgcacatttggcattga |
47480594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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