View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4704_low_39 (Length: 239)

Name: NF4704_low_39
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4704_low_39
NF4704_low_39
[»] chr7 (2 HSPs)
chr7 (19-239)||(24907328-24907548)
chr7 (56-198)||(2212658-2212799)
[»] chr5 (2 HSPs)
chr5 (55-175)||(11026769-11026889)
chr5 (54-207)||(24403656-24403809)
[»] chr4 (2 HSPs)
chr4 (57-161)||(40350454-40350558)
chr4 (53-189)||(6217640-6217776)
[»] chr3 (1 HSPs)
chr3 (56-140)||(14988302-14988387)
[»] chr8 (2 HSPs)
chr8 (57-126)||(7561317-7561386)
chr8 (53-140)||(12768583-12768670)
[»] chr1 (1 HSPs)
chr1 (54-161)||(35154572-35154681)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 24907548 - 24907328
Alignment:
Q  19 ccaaacccatgtttcaaagagctaacagttaaaggacctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattg 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24907548 ccaaacccatgtttcaaagagctaacagtgaaaggacctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattg 24907449  T
Q  119 aaaagcttgctttcctagctttcacgacaatgtgatttcttgctactgttttgaaaattacaatgccattcgagacatactaaaagatgcagtaacaaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  24907448 aaaagcttgctttcctagctttcacgacaatgtgatttcttgcaactgttttgaaaattacaacgccattcgagacatactaaaagatgcagtaacacat 24907349  T
Q  219 tataataaattattacttatc 239  Q
    |||||||||||||||||||||    
T  24907348 tataataaattattacttatc 24907328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 2212658 - 2212799
Alignment:
Q  56 ctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtgatt 155  Q
    |||||||||||||||| |||||||| |||||||||| || ||| |||||||||||  ||||||| ||||| |||||||||||||||||| |||  |||||    
T  2212658 ctgtttggtttggcggtgggaaagccaaacccacgtctcgaagggcaactttcgtggaaattgagaagctagctttcctagctttcacggcaacatgatt 2212757  T
Q  156 tcttgctactgttttgaaaattacaatgccattcgagacatac 198  Q
    |||||| ||  ||||||||| ||||| ||||||| | ||||||    
T  2212758 tcttgccacaattttgaaaa-tacaacgccattctaaacatac 2212799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 175
Target Start/End: Complemental strand, 11026889 - 11026769
Alignment:
Q  55 cctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtgat 154  Q
    ||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||  ||||||| |||||| ||||||||||||||||||||| |||||    
T  11026889 cctgtttggtttggcagtgggaaagccaaacccacgtttcaaagagcgactttcgtggaaattgagaagctttctttcctagctttcacgacaacgtgat 11026790  T
Q  155 ttcttgctactgttttgaaaa 175  Q
    |||||||  | ||||||||||    
T  11026789 ttcttgccgcagttttgaaaa 11026769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 207
Target Start/End: Original strand, 24403656 - 24403809
Alignment:
Q  54 acctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtga 153  Q
    |||||||||||||| ||| |||||||| |||||||| |||||||||||||||||| || ||||  |  | |||||||||||| |||||||||||| ||||    
T  24403656 acctgtttggtttgacggtgggaaagccaaacccacatttcaaagagcaactttcctagaaatgaagtaacttgctttcctaactttcacgacaacgtga 24403755  T
Q  154 tttcttgctactgttttgaaaattacaatgccattcgagacatactaaaagatg 207  Q
    ||| ||||  | |||||||||| || |||| ||||| | ||||||  |||||||    
T  24403756 ttttttgccgcagttttgaaaaatataatgtcattccaaacatacgtaaagatg 24403809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 40350558 - 40350454
Alignment:
Q  57 tgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtgattt 156  Q
    ||||||||||||| | |||||||| |||||||||||||||||||||| |||| || |||| || ||||| ||||||||| |||||||||||| |||||||    
T  40350558 tgtttggtttggcagtgggaaagccaaacccacgtttcaaagagcaattttcatagaaatggagaagctcgctttcctaactttcacgacaacgtgattt 40350459  T
Q  157 cttgc 161  Q
     ||||    
T  40350458 tttgc 40350454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 6217776 - 6217640
Alignment:
Q  53 gacctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtg 152  Q
    ||||| ||||||||||||| || ||||| ||||   ||| | |||||||||||||||| |||||  | ||||||  ||||||||||||||||  || |||    
T  6217776 gacctctttggtttggcggtggaaaagccaaactatcgtcttaaagagcaactttcgtgaaaatgaagaagcttagtttcctagctttcacggtaacgtg 6217677  T
Q  153 atttcttgctactgttttgaaaattacaatgccattc 189  Q
     ||||||||  | |||||||||| |||||||| ||||    
T  6217676 gtttcttgccgcagttttgaaaaatacaatgctattc 6217640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 14988387 - 14988302
Alignment:
Q  56 ctgtttggttt-ggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagcttt 140  Q
    ||||||||||| ||||| |||||||| ||||||||||||||| |||| |||||||| |||||  |||||||| |||||||||||||    
T  14988387 ctgtttggttttggcggtgggaaagccaaacccacgtttcaaggagctactttcgtgaaaatctaaaagcttactttcctagcttt 14988302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 7561386 - 7561317
Alignment:
Q  57 tgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagctt 126  Q
    ||||||||||| | ||||||||||||||| ||||| | ||||||| |||||||| ||||| |||||||||    
T  7561386 tgtttggtttgaccgcgggaaagctaaactcacgtctaaaagagctactttcgtgaaaatagaaaagctt 7561317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 12768583 - 12768670
Alignment:
Q  53 gacctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagcttt 140  Q
    ||||||||||||||||||||||||||||  ||| |  | || || |||||||||||||  || | || ||||||||||||||||||||    
T  12768583 gacctgtttggtttggcggcgggaaagccgaactcgtggtttaaggagcaactttcgtggaagtagagaagcttgctttcctagcttt 12768670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 35154681 - 35154572
Alignment:
Q  54 acctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagctt--gctttcctagctttcacgacaatgt 151  Q
    ||||||||||||||||   || ||||| ||||  |||||||||||||||| ||||||  |||| || | ||||  |||||||||||||||||| |||  |    
T  35154681 acctgtttggtttggcaatggaaaagccaaacatacgtttcaaagagcaaatttcgtggaaatggagatgcttttgctttcctagctttcacggcaacat 35154582  T
Q  152 gatttcttgc 161  Q
    ||||||||||    
T  35154581 gatttcttgc 35154572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University