View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_low_41 (Length: 239)
Name: NF4704_low_41
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_low_41 |
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| [»] scaffold0374 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 2605339 - 2605552
Alignment:
| Q |
11 |
aattcgatgaaagcaccagttgatacggtaaagtaaagtgcactcttcgagtcagtgccaaacttcaaatctctttcactaaataattcccagtaccttc |
110 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||| ||| ||||||||||| ||||||||||||||||||||||| || |||||| |
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| T |
2605339 |
aattcgatgaaagcaccagttgatacggtaatgtaatttgcactcttcaagttagtgccaaactccaaatctctttcactaaataattatcaataccttt |
2605438 |
T |
|
| Q |
111 |
caaagtctcaaaggagttatttatacacaaaatatgaaactagattccctattattactcttagcataacaaacgaaaataaactacttttcctaatatt |
210 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2605439 |
caaagtctttaaggagttatttatacacaaaatatgaaactaaattccctattattactcttagcataacaaacaaaaataaactacttttcctaatatt |
2605538 |
T |
|
| Q |
211 |
aagggatagtaact |
224 |
Q |
| |
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|| ||||||||||| |
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| T |
2605539 |
aatggatagtaact |
2605552 |
T |
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Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 30 - 224
Target Start/End: Complemental strand, 17454799 - 17454604
Alignment:
| Q |
30 |
ttgatacggtaaagtaaagtgcactcttcgagtcagtgccaaacttcaaatctctttcactaaataattcccagtaccttccaaagtctcaaaggagtta |
129 |
Q |
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||||||||||||||||||||||||||||||| ||| || |||||| |||||||||||||| ||||||||| || |||||||||||||||||||||||||| |
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| T |
17454799 |
ttgatacggtaaagtaaagtgcactcttcgaatcaatgtcaaactccaaatctctttcacgaaataattctcaataccttccaaagtctcaaaggagtta |
17454700 |
T |
|
| Q |
130 |
tttatacacaaaatatgaaactagattccctattattactcttagcataacaaacgaaaataaactacttttcctaat-attaagggatagtaact |
224 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
17454699 |
cttatacacaaaatatgaaactaaattccctattattactcttagcataacaaacgaaaataaactacttttcctaataattaatggatagtaact |
17454604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 17446787 - 17446667
Alignment:
| Q |
104 |
taccttccaaagtctcaaaggagttatttatacacaaaatatgaaactagattccctattattactcttagcataacaaacgaaaataaactacttttcc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
17446787 |
taccttccaaagtctcaaaggagttatttatacacaaaatatgaaactaaattccctattattactcttagcataataaaggaaaataaactacttttcc |
17446688 |
T |
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| Q |
204 |
taatattaagggatagtaact |
224 |
Q |
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||||||||| ||||||||||| |
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| T |
17446687 |
taatattaacggatagtaact |
17446667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 223
Target Start/End: Original strand, 10169258 - 10169446
Alignment:
| Q |
31 |
tgatacggtaaagtaaagtgcactcttcgagtcagtgccaaacttcaaatctctttcactaaataattcccagtaccttccaaagtctcaaaggagttat |
130 |
Q |
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||||||| ||||||||||||||||||| |||| ||| |||||| |||||||||||||||||||||||| || |||| | ||||| || |||||||||| |
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| T |
10169258 |
tgatacgataaagtaaagtgcactctttgagttcgtgtcaaactccaaatctctttcactaaataattctcaataccg-ctaaagtttctaaggagttat |
10169356 |
T |
|
| Q |
131 |
ttatacacaaaatatgaaactagattccctattattactcttagcataacaaacgaaaataaactacttttcc-taatattaagggatagtaac |
223 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||| |||| || |||||||||||||||||| ||||||||| |||||||||| |
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| T |
10169357 |
ttatacacaaaatatgaaactaaattccctattactactcttaacatatca----aaaataaactacttttccttaatattaatggatagtaac |
10169446 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 24658097 - 24658179
Alignment:
| Q |
104 |
taccttccaaagtctcaaaggagttatttatacacaaa-atatgaaactagattccctattattactcttagcataacaaacg |
185 |
Q |
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|||||| ||||||||| ||| ||||||||||| |||| ||||||||| | ||| |||||||||||| |||||||||||||| |
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| T |
24658097 |
tacctttcaaagtctcgaagtagttatttatatacaaggatatgaaacaaaatttcctattattacttatagcataacaaacg |
24658179 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 21233154 - 21233059
Alignment:
| Q |
30 |
ttgatacggtaaagtaaagtgcactcttcgagtcagtgccaaacttcaaa-tctctttcactaaataattcccagtaccttccaaagtctcaaagg |
124 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| || |||||||||||||||| |||| |
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| T |
21233154 |
ttgatacgataaagtaaagtgcactcttcgagtcagtgtcaaacttcaaattctctttcattaaataattttcaataccttccaaagtctctaagg |
21233059 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 29923604 - 29923673
Alignment:
| Q |
11 |
aattcgatgaaagcaccagttgatacggtaaagtaaagtgcactcttcgagtcagtgccaaacttcaaat |
80 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || |||||||||||||| |||| |||||| ||||| |
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| T |
29923604 |
aattcgatgaaagcaccagttgatacaataaagttaattgcactcttcgagttagtgtcaaactccaaat |
29923673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 13012222 - 13012152
Alignment:
| Q |
154 |
attccctattattactcttagcataacaaacgaaaat-aaactacttttcctaatattaagggatagtaac |
223 |
Q |
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|||||| |||||||||| ||| |||||||||||| | ||||||||||| ||| |||||| |||||||||| |
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|
| T |
13012222 |
attcccaattattactcctaggataacaaacgaatttaaaactactttttctattattaatggatagtaac |
13012152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0374 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 14717 - 14680
Alignment:
| Q |
43 |
gtaaagtgcactcttcgagtcagtgccaaacttcaaat |
80 |
Q |
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|||||||||||| ||||||||||||||||||| ||||| |
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| T |
14717 |
gtaaagtgcacttttcgagtcagtgccaaactccaaat |
14680 |
T |
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