View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4704_low_45 (Length: 227)

Name: NF4704_low_45
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4704_low_45
NF4704_low_45
[»] chr4 (3 HSPs)
chr4 (84-177)||(37326626-37326719)
chr4 (19-59)||(37326734-37326774)
chr4 (91-168)||(37315097-37315172)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 37326719 - 37326626
Alignment:
Q  84 atatgcaaagaagaatgtgtgaatttttaagaaaattcatgccacatacatatagagtttctaatgtggttaaattaagcacgtgtgcttttca 177  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37326719 atatgcaaagaagaatgtgtgaatttttaagaaaattcatcccacatacatatagagtttctaatgtggttaaattaagcacgtgtgcttttca 37326626  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 37326774 - 37326734
Alignment:
Q  19 acatggaagtcatctgtagcaaattagcaataagagtggtt 59  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  37326774 acatggaagtcatcggtagcaaattagcaataagagtggtt 37326734  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 37315172 - 37315097
Alignment:
Q  91 aagaagaatgtgtgaatttttaagaaaattcatgccacatacatatagagtttctaatgtggttaaattaagcacgtg 168  Q
    |||||||||||||||| || | |||||| |||||| |||||  |||||||||| ||||||| || |||||||||||||    
T  37315172 aagaagaatgtgtgaacttgtgagaaaagtcatgctacata--tatagagtttttaatgtgctttaattaagcacgtg 37315097  T

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