View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4704_low_46 (Length: 227)

Name: NF4704_low_46
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4704_low_46
NF4704_low_46
[»] chr8 (10 HSPs)
chr8 (88-220)||(9078806-9078941)
chr8 (88-220)||(9087583-9087718)
chr8 (1-71)||(18036807-18036877)
chr8 (1-69)||(16290873-16290941)
chr8 (1-70)||(24184743-24184812)
chr8 (1-69)||(26657684-26657752)
chr8 (11-72)||(24317426-24317487)
chr8 (1-67)||(26867475-26867541)
chr8 (1-42)||(19742059-19742100)
chr8 (13-69)||(21593212-21593268)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-69)||(1487-1555)
[»] chr1 (9 HSPs)
chr1 (1-55)||(19054392-19054446)
chr1 (1-79)||(16816217-16816295)
chr1 (1-69)||(10433214-10433282)
chr1 (1-55)||(34528926-34528980)
chr1 (1-69)||(10423794-10423862)
chr1 (1-61)||(18332702-18332762)
chr1 (13-69)||(27035845-27035901)
chr1 (13-74)||(13309367-13309428)
chr1 (16-69)||(33012786-33012839)
[»] scaffold0437 (2 HSPs)
scaffold0437 (1-70)||(11431-11500)
scaffold0437 (13-69)||(14323-14379)
[»] chr6 (14 HSPs)
chr6 (1-70)||(14641453-14641522)
chr6 (4-79)||(8483615-8483690)
chr6 (2-69)||(20898980-20899047)
chr6 (1-79)||(24617716-24617794)
chr6 (1-79)||(20589650-20589728)
chr6 (13-69)||(34338087-34338143)
chr6 (5-55)||(15141911-15141961)
chr6 (5-70)||(13575022-13575087)
chr6 (5-70)||(13577561-13577626)
chr6 (1-60)||(7242877-7242936)
chr6 (16-69)||(11319501-11319554)
chr6 (17-70)||(13565946-13565999)
chr6 (13-70)||(13570494-13570551)
chr6 (13-69)||(12435983-12436039)
[»] chr5 (6 HSPs)
chr5 (1-70)||(15614754-15614823)
chr5 (1-69)||(21711531-21711599)
chr5 (1-71)||(2259388-2259458)
chr5 (15-70)||(4120550-4120605)
chr5 (13-69)||(21877894-21877950)
chr5 (3-55)||(24765508-24765560)
[»] scaffold0068 (1 HSPs)
scaffold0068 (1-69)||(2311-2379)
[»] chr3 (9 HSPs)
chr3 (1-69)||(1051310-1051378)
chr3 (1-55)||(10623242-10623296)
chr3 (17-69)||(25760053-25760105)
chr3 (1-69)||(16309658-16309726)
chr3 (1-69)||(18490652-18490720)
chr3 (18-69)||(26953944-26953995)
chr3 (13-74)||(19185105-19185166)
chr3 (13-69)||(3736510-3736566)
chr3 (13-69)||(26430286-26430342)
[»] chr4 (5 HSPs)
chr4 (4-55)||(34657920-34657971)
chr4 (4-69)||(37005894-37005959)
chr4 (15-69)||(11415968-11416022)
chr4 (1-55)||(19298816-19298871)
chr4 (11-74)||(34512087-34512150)
[»] chr7 (6 HSPs)
chr7 (1-69)||(980936-981004)
chr7 (1-55)||(12163412-12163466)
chr7 (14-78)||(10996404-10996468)
chr7 (1-55)||(1537965-1538019)
chr7 (1-39)||(1862350-1862388)
chr7 (4-69)||(1633324-1633389)
[»] scaffold0114 (1 HSPs)
scaffold0114 (1-79)||(2959-3037)
[»] chr2 (5 HSPs)
chr2 (1-55)||(1490671-1490725)
chr2 (1-55)||(40926468-40926522)
chr2 (1-69)||(28522869-28522937)
chr2 (13-69)||(17679707-17679763)
chr2 (13-69)||(20477454-20477510)
[»] scaffold0196 (1 HSPs)
scaffold0196 (13-55)||(793-835)
[»] scaffold0292 (1 HSPs)
scaffold0292 (13-69)||(21249-21305)
[»] scaffold0166 (1 HSPs)
scaffold0166 (3-55)||(8005-8057)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 9078806 - 9078941
Alignment:
Q  88 atgttccaaaacaagtaaaaag-ggggaaatgtgaaataaagg--aaacaacttacaattttgtcaaatagttctcctccattaaccaactccaagacaa 184  Q
    |||||||||||||||||||||  |||||||| ||||  ||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9078806 atgttccaaaacaagtaaaaaatggggaaatatgaataaaagatcaaacaacttacaattttgtcaaatagttctcctccattaaccaactccaaaacaa 9078905  T
Q  185 tgtaaatctttgttttgcttgccatcacctatgctt 220  Q
    |||||||||||||||||||||||||||||| |||||    
T  9078906 tgtaaatctttgttttgcttgccatcacctgtgctt 9078941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 9087583 - 9087718
Alignment:
Q  88 atgttccaaaacaagtaaaaag-ggggaaatgtgaaataaagg--aaacaacttacaattttgtcaaatagttctcctccattaaccaactccaagacaa 184  Q
    |||||||||||||||||||||  |||||||| ||||  ||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9087583 atgttccaaaacaagtaaaaaatggggaaatatgaataaaagatcaaacaacttacaattttgtcaaatagttctcctccattaaccaactccaaaacaa 9087682  T
Q  185 tgtaaatctttgttttgcttgccatcacctatgctt 220  Q
    |||||||||||||||||||||||||||||| |||||    
T  9087683 tgtaaatctttgttttgcttgccatcacctgtgctt 9087718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 18036877 - 18036807
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccg 71  Q
    ||||||||||| |||||||||| | ||||||||||||||||| |||||||||||| |||||||||||||||    
T  18036877 atggaggttcctcggggtgccaacatagttgggatgtcggtgtttcctcttgatgtttgtcctctctcccg 18036807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 16290873 - 16290941
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    ||||||||| |||||||||||| ||||||||||||||||||| | |||||||||| ||||||| |||||    
T  16290873 atggaggtttcccggggtgccaacctagttgggatgtcggtgttgcctcttgatgtttgtcctttctcc 16290941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 24184812 - 24184743
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 70  Q
    ||||||| | |||||| ||||| ||||||||||||||||||| | |||||||||| ||||||||||||||    
T  24184812 atggagggttcccgggatgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctccc 24184743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 26657684 - 26657752
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    ||||||||| ||||  |||||| | ||||||||||||||||| ||||||||||||  ||||||||||||    
T  26657684 atggaggtttcccgaagtgccaacttagttgggatgtcggtgtttcctcttgatgcatgtcctctctcc 26657752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 24317426 - 24317487
Alignment:
Q  11 cccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccgg 72  Q
    |||||||||||| ||||||||| |||| |||| ||||||||||||  ||| |||||||||||    
T  24317426 cccggggtgccaacctagttggtatgttggtgtttcctcttgatgtatgttctctctcccgg 24317487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26867475 - 26867541
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctct 67  Q
    ||||||||| |||| ||||||| |||||||||||||||| || | |||||||| |  ||||||||||    
T  26867475 atggaggtttcccgaggtgccaacctagttgggatgtcgatgatgcctcttgaagcctgtcctctct 26867541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19742059 - 19742100
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtg 42  Q
    ||||||| | |||||||||||| |||||||||||||||||||    
T  19742059 atggaggcttcccggggtgccaacctagttgggatgtcggtg 19742100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 21593212 - 21593268
Alignment:
Q  13 cggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||||| ||||||||| |||||| || | ||||||||||  ||||||||||||    
T  21593212 cggggtgccaacctagttggaatgtcgatgatgcctcttgatgcctgtcctctctcc 21593268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1555 - 1487
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    ||||||||| |||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||    
T  1555 atggaggtttcccggggtgccaacctagttgggatgtcggtgttgcctcttgatgcttgtcctctctcc 1487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19054446 - 19054392
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 55  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  19054446 atggaggttccccggggtgccaacctagttgggatgtcggtgtttcctcttgatg 19054392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 16816295 - 16816217
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggttcatcc 79  Q
    |||||||||||||| || |||| |||||||||||||| |||| ||||||||||||  ||||| ||||||||||| ||||    
T  16816295 atggaggttccccgaggcgccaacctagttgggatgttggtgtttcctcttgatgcatgtccactctcccggtttatcc 16816217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10433214 - 10433282
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||||| ||| ||||| | ||||||||||||||||||| |||||||||||| ||||||| |||||    
T  10433214 atggaggttctccgaggtgcaaacctagttgggatgtcggtgcttcctcttgatgcttgtcctttctcc 10433282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34528980 - 34528926
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 55  Q
    ||||||||| |||||||||||| |||||||||||||||| || ||||||||||||    
T  34528980 atggaggtttcccggggtgccaacctagttgggatgtcgctgtttcctcttgatg 34528926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 10423862 - 10423794
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    ||||||||| | |||||||||| |||||||||||||||| || | |||||||||| |||||| ||||||    
T  10423862 atggaggtttctcggggtgccaacctagttgggatgtcgatgttgcctcttgatgcttgtccactctcc 10423794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18332762 - 18332702
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtc 61  Q
    |||||||||| ||||||||||| |||||||||||||||| || || ||||| ||| |||||    
T  18332762 atggaggttctccggggtgccaacctagttgggatgtcgatgttttctcttaatgcttgtc 18332702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 27035901 - 27035845
Alignment:
Q  13 cggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||| ||||| |||||||||||||||| || | |||||||||| |||||||||||||    
T  27035901 cgggatgccaacctagttgggatgtcgatgatgcctcttgatgcttgtcctctctcc 27035845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 13309428 - 13309367
Alignment:
Q  13 cggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggtt 74  Q
    |||||||||| |||||||||||||||| || | ||||||||||  ||||| |||||| ||||    
T  13309428 cggggtgccaacctagttgggatgtcgatgatgcctcttgatgcctgtccactctcctggtt 13309367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 33012786 - 33012839
Alignment:
Q  16 ggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    ||||||| |||||||||||||||| || |||  ||||||| |||||||||||||    
T  33012786 ggtgccaacctagttgggatgtcgttgcttctccttgatgtttgtcctctctcc 33012839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 11431 - 11500
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 70  Q
    ||||||| | |||||||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||    
T  11431 atggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctccc 11500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 14379 - 14323
Alignment:
Q  13 cggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||| ||||| |||||||||||||||| || | ||||||||||  ||||||||||||    
T  14379 cgggatgccaacctagttgggatgtcgatgatgcctcttgatgtctgtcctctctcc 14323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 14641453 - 14641522
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 70  Q
    ||||||| | |||||||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||    
T  14641453 atggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctccc 14641522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 8483690 - 8483615
Alignment:
Q  4 gaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggttcatcc 79  Q
    ||||||||||||||||||| ||||||||||||||| ||| ||||||||||||  ||||| | ||||||||| ||||    
T  8483690 gaggttccccggggtgccaacctagttgggatgtccgtgtttcctcttgatgcatgtccacgctcccggtttatcc 8483615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 20898980 - 20899047
Alignment:
Q  2 tggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||| || ||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||    
T  20898980 tggaggtttcctggggtgccaacctagttgggatgtcggtgttgcctcttgatgcttgtcctctctcc 20899047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 24617794 - 24617716
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggttcatcc 79  Q
    |||||||||  ||||||||||| ||||||||||||||||||| ||||||||||||  ||||| | ||||||||| ||||    
T  24617794 atggaggttttccggggtgccaacctagttgggatgtcggtgtttcctcttgatgcatgtccacgctcccggtttatcc 24617716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 20589650 - 20589728
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggttcatcc 79  Q
    |||||||||| ||||||||||| |||||||| |||||||| ||| ||||||||||  |||||| ||||| |||| ||||    
T  20589650 atggaggttctccggggtgccaacctagttgagatgtcggaggtccctcttgatgcctgtcctttctcctggtttatcc 20589728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 34338143 - 34338087
Alignment:
Q  13 cggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||||| |||||||||||||||| || ||||||||||||| |||| |||||||    
T  34338143 cggggtgccaacctagttgggatgtcgatgattcctcttgatggctgtcatctctcc 34338087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 15141961 - 15141911
Alignment:
Q  5 aggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 55  Q
    ||||| |||||| ||||| ||||||||||||||||||| ||||||||||||    
T  15141961 aggtttcccgggttgccaacctagttgggatgtcggtgtttcctcttgatg 15141911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 13575022 - 13575087
Alignment:
Q  5 aggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 70  Q
    ||||| ||||| |||||| ||||||||||||||||||| | ||||||||||  |||| ||||||||    
T  13575022 aggtttcccggagtgccaacctagttgggatgtcggtgttccctcttgatgcatgtcttctctccc 13575087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 13577561 - 13577626
Alignment:
Q  5 aggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 70  Q
    ||||| ||||| |||||| ||||||||||||||||||| | ||||||||||  |||| ||||||||    
T  13577561 aggtttcccggagtgccaacctagttgggatgtcggtgttccctcttgatgcatgtcttctctccc 13577626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7242936 - 7242877
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgt 60  Q
    |||| |||||| |||||||||| ||||||||||||||||  | |||||||||||| ||||    
T  7242936 atgggggttcctcggggtgccaacctagttgggatgtcgtcgcttcctcttgatgcttgt 7242877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 11319501 - 11319554
Alignment:
Q  16 ggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    ||||||| |||||||| ||||| |||| ||||||||||||  ||||||||||||    
T  11319501 ggtgccaacctagttgagatgttggtgcttcctcttgatgcatgtcctctctcc 11319554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 13565946 - 13565999
Alignment:
Q  17 gtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 70  Q
    |||||| |||||||||||||||| || | ||||||||||  |||||||||||||    
T  13565946 gtgccaacctagttgggatgtcgttgttccctcttgatgcatgtcctctctccc 13565999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 13570494 - 13570551
Alignment:
Q  13 cggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 70  Q
    ||||||||||  ||||||||||||| |||| | ||||||||||  |||||||||||||    
T  13570494 cggggtgccaatctagttgggatgtaggtgttccctcttgatgcatgtcctctctccc 13570551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 12435983 - 12436039
Alignment:
Q  13 cggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||||| |||||||||||||||| || | |||| |||||  ||||||||||||    
T  12435983 cggggtgccaacctagttgggatgtcgatgatgcctcctgatgcatgtcctctctcc 12436039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 15614754 - 15614823
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 70  Q
    ||||||| | |||||||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||    
T  15614754 atggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgcttgtcctctctccc 15614823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21711599 - 21711531
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    ||||||| | |||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||    
T  21711599 atggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgcttgtcctctctcc 21711531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 2259458 - 2259388
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccg 71  Q
    ||||||||| |||||| ||||| ||||||||||||||||||| ||||||||||||  ||||| ||||||||    
T  2259458 atggaggtttcccgggatgccaacctagttgggatgtcggtgtttcctcttgatgcatgtccactctcccg 2259388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 4120550 - 4120605
Alignment:
Q  15 gggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctccc 70  Q
    |||||||| ||||||||||||||||||| | |||||||||| || |||||||||||    
T  4120550 gggtgccaacctagttgggatgtcggtgttccctcttgatgtttatcctctctccc 4120605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 21877950 - 21877894
Alignment:
Q  13 cggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||||| |||||||||||||||| || | || ||||||| |||||| ||||||    
T  21877950 cggggtgccaacctagttgggatgtcgatgatgccgcttgatgtttgtccactctcc 21877894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 24765560 - 24765508
Alignment:
Q  3 ggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 55  Q
    ||||||| |||||| |||||  |||||||||||||||||  ||||||||||||    
T  24765560 ggaggtttcccgggatgccaatctagttgggatgtcggtatttcctcttgatg 24765508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2311 - 2379
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    ||||||| | |||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||    
T  2311 atggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgcttgtcctctctcc 2379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1051378 - 1051310
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    ||||||||| |||| ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||    
T  1051378 atggaggtttcccgaggtgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctcc 1051310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10623296 - 10623242
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 55  Q
    |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  10623296 atggaggttccccggggtgccaacctagttaggatgtcggtgtttcctcttgatg 10623242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 25760053 - 25760105
Alignment:
Q  17 gtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||| ||||||||||||||||||| | |||||||||| |||||||||||||    
T  25760053 gtgccaacctagttgggatgtcggtgttgcctcttgatgcttgtcctctctcc 25760105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16309726 - 16309658
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||||| ||||||||||| | ||||||||||||||  | | ||||||||||  ||||||||||||    
T  16309726 atggaggttctccggggtgccaacttagttgggatgtcgaagctacctcttgatgtctgtcctctctcc 16309658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 18490720 - 18490652
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||||| ||||||||||| | ||||||||||||||  | | ||||||||||  ||||||||||||    
T  18490720 atggaggttctccggggtgccaacttagttgggatgtcgaagctacctcttgatgtctgtcctctctcc 18490652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 26953995 - 26953944
Alignment:
Q  18 tgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    ||||| ||||||||||||||||||| ||||||||||||  |||| |||||||    
T  26953995 tgccaacctagttgggatgtcggtgtttcctcttgatgcatgtcgtctctcc 26953944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 19185105 - 19185166
Alignment:
Q  13 cggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggtt 74  Q
    |||||||||| |||||||||||||||| || |||  |||||||  |||||||||||| ||||    
T  19185105 cggggtgccaacctagttgggatgtcgttgcttctccttgatgcctgtcctctctcctggtt 19185166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 3736510 - 3736566
Alignment:
Q  13 cggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||||| |||||||||||||||| || | || ||||||| |||||| ||||||    
T  3736510 cggggtgccaacctagttgggatgtcgatgatgccgcttgatgtttgtccactctcc 3736566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 26430286 - 26430342
Alignment:
Q  13 cggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||||| ||||||| |||||||| || | ||||||||||  ||||||||||||    
T  26430286 cggggtgccaacctagttaggatgtcgatgatgcctcttgatgtatgtcctctctcc 26430342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 34657971 - 34657920
Alignment:
Q  4 gaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 55  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  34657971 gaggttccccggggtgccaacctagttgggatgtcggtgtttcctcttgatg 34657920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 37005959 - 37005894
Alignment:
Q  4 gaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    ||||||| ||||||||||| |||| |||||||||||||| ||||||||||||  ||||||||||||    
T  37005959 gaggttctccggggtgccaacctaattgggatgtcggtgcttcctcttgatgcatgtcctctctcc 37005894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 11416022 - 11415968
Alignment:
Q  15 gggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||| | ||||||||||||||||| ||||| |||||| |||||||||||||    
T  11416022 gggtgccaacttagttgggatgtcggtgtttccttttgatgtttgtcctctctcc 11415968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19298871 - 19298816
Alignment:
Q  1 atggaggttccccgggg-tgccatcctagttgggatgtcggtggttcctcttgatg 55  Q
    ||||||||||||||||| ||||| |||||||| |||||| ||| ||||||||||||    
T  19298871 atggaggttccccgggggtgccaacctagttgagatgtcagtgtttcctcttgatg 19298816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 34512087 - 34512150
Alignment:
Q  11 cccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggtt 74  Q
    |||||||||||| |||||||||||||||| || | ||||||||||  ||||| |||||| ||||    
T  34512087 cccggggtgccaacctagttgggatgtcgatgatgcctcttgatgcctgtccactctcctggtt 34512150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 980936 - 981004
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||||| |||| |||||| ||||||||||||||||| | | |||||||||| |||||||||||||    
T  980936 atggaggttctccggagtgccaacctagttgggatgtcggagctgcctcttgatgtttgtcctctctcc 981004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12163412 - 12163466
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 55  Q
    ||||||||| |||| ||||||| ||||||||||||||||||| | ||||||||||    
T  12163412 atggaggtttcccgaggtgccaacctagttgggatgtcggtgttgcctcttgatg 12163466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 10996404 - 10996468
Alignment:
Q  14 ggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggttcatc 78  Q
    ||||||||| | |||||| ||| |||||| |||||||||||| || |||||||||||| ||||||    
T  10996404 ggggtgccaacttagttgagatatcggtgtttcctcttgatgtttttcctctctcccgattcatc 10996468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1538019 - 1537965
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 55  Q
    ||||||||| |||  |||| || ||||||||||||||||||| ||||||||||||    
T  1538019 atggaggtttccctaggtggcaacctagttgggatgtcggtgtttcctcttgatg 1537965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1862388 - 1862350
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcg 39  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  1862388 atggaggttctccggggtgccaacctagttgggatgtcg 1862350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 1633324 - 1633389
Alignment:
Q  4 gaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||| | ||||||| || |||||||||  |||||||| ||||||||||||  ||||||||||||    
T  1633324 gaggtttctcggggtgtcaacctagttggattgtcggtgtttcctcttgatgcatgtcctctctcc 1633389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 3037 - 2959
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcccggttcatcc 79  Q
    |||||||||||||||| ||||| |||| | |||||||||||| ||||||||||||  ||||| | ||||||||| ||||    
T  3037 atggaggttccccgggatgccaacctaatcgggatgtcggtgtttcctcttgatgcatgtccacgctcccggtttatcc 2959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1490671 - 1490725
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 55  Q
    |||||||||| |||||||| || ||||||||||||||||| ||| ||||||||||    
T  1490671 atggaggttctccggggtgacaacctagttgggatgtcggaggtccctcttgatg 1490725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40926522 - 40926468
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 55  Q
    ||||||||| |||||||||||| |||||||||||||||| || |||||| |||||    
T  40926522 atggaggtttcccggggtgccaacctagttgggatgtcgatgtttcctcctgatg 40926468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28522869 - 28522937
Alignment:
Q  1 atggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||||| |  |||||||| |||||||||||||||  || ||||||||||||  ||||||||||||    
T  28522869 atggaggttctctagggtgccaacctagttgggatgtcaatgtttcctcttgatgtctgtcctctctcc 28522937  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 17679763 - 17679707
Alignment:
Q  13 cggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||||| |||||||||||||||| || | || ||||||| |||||| ||||||    
T  17679763 cggggtgccaacctagttgggatgtcgatgatgccgcttgatgtttgtccactctcc 17679707  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 20477454 - 20477510
Alignment:
Q  13 cggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||||| |||||||||||||||| || | ||||||||||  |||||| |||||    
T  20477454 cggggtgccaacctagttgggatgtcgatgatgcctcttgatgtctgtcctttctcc 20477510  T

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Target: scaffold0196 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 793 - 835
Alignment:
Q  13 cggggtgccatcctagttgggatgtcggtggttcctcttgatg 55  Q
    |||||||||| ||||||||||||||||||| | ||||||||||    
T  793 cggggtgccaacctagttgggatgtcggtgttgcctcttgatg 835  T

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Target: scaffold0292 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 21249 - 21305
Alignment:
Q  13 cggggtgccatcctagttgggatgtcggtggttcctcttgatggttgtcctctctcc 69  Q
    |||||||||| |||||||||||||||| || | ||||||||||  ||||| ||||||    
T  21249 cggggtgccaacctagttgggatgtcgatgatgcctcttgatgcctgtccactctcc 21305  T

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Target: scaffold0166 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 8057 - 8005
Alignment:
Q  3 ggaggttccccggggtgccatcctagttgggatgtcggtggttcctcttgatg 55  Q
    ||||||| |||||| |||||  |||||||||||||||||  ||||||||||||    
T  8057 ggaggtttcccgggatgccaatctagttgggatgtcggtatttcctcttgatg 8005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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