View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4704_low_5 (Length: 522)
Name: NF4704_low_5
Description: NF4704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4704_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 516
Target Start/End: Original strand, 41029647 - 41030150
Alignment:
| Q |
19 |
atctgtatgttgtctgtgataggtagtttacttttttatggtaattatgttatgtaactactacttgtttcattgaagacgtatttatctttcagatctc |
118 |
Q |
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| T |
41029647 |
atctgtatgttgtctgtgataggtagtttacttttttatggtaattatgttatgtaactactacttgtttcattgaagacgtatttatctttcagatctc |
41029746 |
T |
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| Q |
119 |
atttcattcattttctattgtttttgctcttgttagatttttacctgtgattttgaacctataaattgactttgaaaatttgtagttcaccgaaaatttg |
218 |
Q |
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| T |
41029747 |
atttcattcattttctattgtttttgctcttgttggatttttatctgtgattttgaacctataaattgactttgaaaatttgtagttcaccgaaaatttt |
41029846 |
T |
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| Q |
219 |
taacactct--agaaaacaatatgaaaagcatccattgcaaaattcaaaatgttacatgattttattagtcagg----cgtatagttcaagctatgtgtt |
312 |
Q |
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| T |
41029847 |
taacactctctagaaaacaatatgaaaagcatctattgcaaaattcaaaatgttacatgattttattagtcaggcaggcgtatagttcaagctatgtgtt |
41029946 |
T |
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| Q |
313 |
gcgtgagataaatcaattccattgcttaaactaacattatcataatatctaagctgtaagatagataggactctcctcaatgctaatagtccattttaaa |
412 |
Q |
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| T |
41029947 |
gcgtgagataaatcaattccattgcttaaactaacattatcataatatctaagctgtaagatagataggactctcctcaatgctaatagtccattttaaa |
41030046 |
T |
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| Q |
413 |
ggacaccttagcatggaatatccatatttagttttaaatgtcatcagatttaattaaataaccgattatgtcccatcccattggactaaaaaactgatga |
512 |
Q |
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| T |
41030047 |
ggacaccttagcatggaatatccatatttagttttaaatgtcatcagatttaattaaataactgattatgtcccatcccattggactaaaaaactgatca |
41030146 |
T |
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| Q |
513 |
tgtc |
516 |
Q |
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|||| |
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| T |
41030147 |
tgtc |
41030150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 41034038 - 41034070
Alignment:
| Q |
368 |
gtaagatagataggactctcctcaatgctaata |
400 |
Q |
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| T |
41034038 |
gtaagatagataggactctcctcaatgttaata |
41034070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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