View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4705-Insertion-1 (Length: 1066)
Name: NF4705-Insertion-1
Description: NF4705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4705-Insertion-1 |
 | |
|
| [»] chr5 (6 HSPs) |
| |
|
| [»] chr7 (13 HSPs) |
| |
|
| [»] scaffold0479 (2 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 951; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 951; E-Value: 0
Query Start/End: Original strand, 28 - 1066
Target Start/End: Complemental strand, 33811867 - 33810828
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33811867 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33811770 |
T |
|
| Q |
128 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacg |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811769 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33811670 |
T |
|
| Q |
228 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811669 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
33811570 |
T |
|
| Q |
328 |
tatgtgagtgaggattgtgttgtggtgtgtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttatt |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811569 |
tatgtgagtgaggattgtgttgtggtgtgtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttatt |
33811470 |
T |
|
| Q |
428 |
ttccaatccttgctgcaccatctttgacaatagttaccaattgtcaagtttgtcaatttgttactgacatggtagaatttttaccaccgcaagctattat |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811469 |
ttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaatttttaccaccgcaagctattat |
33811370 |
T |
|
| Q |
528 |
tcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagccaaagg |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811369 |
tcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagccaaagg |
33811270 |
T |
|
| Q |
628 |
gaaactatccttagattagtttgaggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgct |
727 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811269 |
gaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgct |
33811170 |
T |
|
| Q |
728 |
ctgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaat |
827 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811169 |
ccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaat |
33811070 |
T |
|
| Q |
828 |
ggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagaaaacataactttcttgattctggcctaactcttgtaggaatttcttcat |
927 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
33811069 |
ggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataaatttcttgattctggcctaactcttgcaggaacttcttcat |
33810970 |
T |
|
| Q |
928 |
ccacatcatct-cttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacgcacttttgtagtcgcga-tggcatgagacagct |
1025 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| |
|
|
| T |
33810969 |
ccacatcatctccttacagccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacgcacttttgtagtcgagattgccatgagacagct |
33810870 |
T |
|
| Q |
1026 |
ccccctgc-agagtaatcaaatatccggatgtagattttctt |
1066 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||||||||||| |
|
|
| T |
33810869 |
ccccctgcaaaagtaatcaaatatccagatgtagattttctt |
33810828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 951; E-Value: 0
Query Start/End: Original strand, 28 - 1066
Target Start/End: Complemental strand, 33816785 - 33815746
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33816785 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33816688 |
T |
|
| Q |
128 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacg |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816687 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33816588 |
T |
|
| Q |
228 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816587 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
33816488 |
T |
|
| Q |
328 |
tatgtgagtgaggattgtgttgtggtgtgtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttatt |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816487 |
tatgtgagtgaggattgtgttgtggtgtgtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttatt |
33816388 |
T |
|
| Q |
428 |
ttccaatccttgctgcaccatctttgacaatagttaccaattgtcaagtttgtcaatttgttactgacatggtagaatttttaccaccgcaagctattat |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816387 |
ttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaatttttaccaccgcaagctattat |
33816288 |
T |
|
| Q |
528 |
tcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagccaaagg |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816287 |
tcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagccaaagg |
33816188 |
T |
|
| Q |
628 |
gaaactatccttagattagtttgaggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgct |
727 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816187 |
gaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgct |
33816088 |
T |
|
| Q |
728 |
ctgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaat |
827 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816087 |
ccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaat |
33815988 |
T |
|
| Q |
828 |
ggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagaaaacataactttcttgattctggcctaactcttgtaggaatttcttcat |
927 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
33815987 |
ggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataaatttcttgattctggcctaactcttgcaggaacttcttcat |
33815888 |
T |
|
| Q |
928 |
ccacatcatct-cttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacgcacttttgtagtcgcga-tggcatgagacagct |
1025 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| |
|
|
| T |
33815887 |
ccacatcatctccttacagccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacgcacttttgtagtcgagattgccatgagacagct |
33815788 |
T |
|
| Q |
1026 |
ccccctgc-agagtaatcaaatatccggatgtagattttctt |
1066 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||||||||||| |
|
|
| T |
33815787 |
ccccctgcaaaagtaatcaaatatccagatgtagattttctt |
33815746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 28 - 605
Target Start/End: Complemental strand, 33808213 - 33807638
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33808213 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33808116 |
T |
|
| Q |
128 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacg |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808115 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33808016 |
T |
|
| Q |
228 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808015 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
33807916 |
T |
|
| Q |
328 |
tatgtgagtgaggattgtgttgtggtgtgtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttatt |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807915 |
tatgtgagtgaggattgtgttgtggtgtgtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttatt |
33807816 |
T |
|
| Q |
428 |
ttccaatccttgctgcaccatctttgacaatagttaccaattgtcaagtttgtcaatttgttactgacatggtagaatttttaccaccgcaagctattat |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807815 |
ttccaatccttgctgcaccatctttgacaatagttacccattgccaagtttgtcaatttgttactgacatggtagaatttttaccaccgcaagctattat |
33807716 |
T |
|
| Q |
528 |
tcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaaca |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807715 |
tcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaaca |
33807638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 16698601 - 16698504
Alignment:
| Q |
111 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa |
206 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| || ||||||| | ||||||| | | ||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
16698601 |
aattttagtgtggaaatccttctcaatgtgagaaagggaaaaattatgggacccttggacctcttaaaacttccactataatgataatgggaatacaa |
16698504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 22763905 - 22764002
Alignment:
| Q |
111 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa |
206 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| || ||||||||||||||||| | ||||||||||| | | ||||||| ||||||||||||||| |
|
|
| T |
22763905 |
aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggaccattgggcctcttaaaacttatgctataatgataatgggaatacaa |
22764002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 16698670 - 16698618
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcact |
80 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
16698670 |
tgttgggaaatatatgcataatttccatcctccgtgaactcagaataggcact |
16698618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 603 - 1066
Target Start/End: Original strand, 4836172 - 4836635
Alignment:
| Q |
603 |
acaattctccccctccagccaaagggaaactatccttagattagtttgaggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttgg |
702 |
Q |
| |
|
||||||||||||||||||||| |||| || ||||| ||||||||| ||||||| ||| || ||||||||||| |||||||||||||||||||| || |
|
|
| T |
4836172 |
acaattctccccctccagccataggggaatg--cctta-attagtttggggttgctaccattccagcagcttgtttgcaaaactctatcttctctttcgg |
4836268 |
T |
|
| Q |
703 |
tagagcttttgtcatcatatctgctctgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctc |
802 |
Q |
| |
|
||| | |||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
4836269 |
tagcggttttgtcatcatgtctgctccattctcatttgtgtgaattttctctatttgcagcagtttattctctaacacatcacgtatccaatgatacctc |
4836368 |
T |
|
| Q |
803 |
acatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagaaaacataactttcttgattctggc |
902 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4836369 |
acatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggc |
4836468 |
T |
|
| Q |
903 |
ctaactcttgtaggaatttcttcatccacatcatct-cttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacgcacttttg |
1001 |
Q |
| |
|
|||||||||||| || ||||||||||| | |||| ||||||||||||||||||||||||||| || ||||| |||||||| ||||||| ||||||||| |
|
|
| T |
4836469 |
ataactcttgtagaaacttcttcatccataggatctccttacaaccttcagtgattgcgatgtattcagcttccgtggtactcaaagcaatgcacttttg |
4836568 |
T |
|
| Q |
1002 |
tagtcgcga-tggcatgagacagctccccctgc-agagtaatcaaatatccggatgtagattttctt |
1066 |
Q |
| |
|
|| |||||| || |||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
4836569 |
taatcgcgattgccatgagacagctccccctgcaaaagtaatcaaatatccggatgtagattttctt |
4836635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 641 - 819
Target Start/End: Original strand, 24379927 - 24380105
Alignment:
| Q |
641 |
gattagtttgaggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctctgttgtcattgg |
740 |
Q |
| |
|
|||||||||| |||||||||||| || ||||||||||| |||||||||||||||||||||| ||||| |||||||||||| || |||| || | ||||| |
|
|
| T |
24379927 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttgatagaggttttgtcatcatgtcggctccattcttattgg |
24380026 |
T |
|
| Q |
741 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttga |
819 |
Q |
| |
|
|||||| |||||||| || || || |||| |||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
24380027 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcattgtgttttga |
24380105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 4842648 - 4842857
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || | |||||| |
|
|
| T |
4842648 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataagtgtaatgacaca-aagagaatttt |
4842744 |
T |
|
| Q |
117 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
212 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||| |||||| | ||||||||||| | ||||||||||| ||||| ||||||||| | |||| |
|
|
| T |
4842745 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaacttccactataatgataataggaatacaacaacttc |
4842844 |
T |
|
| Q |
213 |
accctcaggtgga |
225 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
4842845 |
acccttaggtgga |
4842857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 28 - 206
Target Start/End: Original strand, 25857131 - 25857317
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||| | |||||| |
|
|
| T |
25857131 |
tgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcact--agcggaaacgtgaaatataagcgtaatgacacagag---aatttt |
25857225 |
T |
|
| Q |
117 |
agcgtggaaaaccttctcaatgtgag-taaggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
25857226 |
agcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaa |
25857317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 27 - 225
Target Start/End: Original strand, 4835574 - 4835782
Alignment:
| Q |
27 |
gtgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatg-acac------aca-acaaaattttag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| |||| | || ||| | | |||||||| |
|
|
| T |
4835574 |
gtgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcact--agtggaaacgtgaaatataaacgtaatgacacagagaattttag |
4835671 |
T |
|
| Q |
119 |
cgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcac |
214 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||| ||| | |||||| |
|
|
| T |
4835672 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcac |
4835771 |
T |
|
| Q |
215 |
cctcaggtgga |
225 |
Q |
| |
|
||| ||||||| |
|
|
| T |
4835772 |
ccttaggtgga |
4835782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 109 - 225
Target Start/End: Original strand, 13465046 - 13465165
Alignment:
| Q |
109 |
aaaattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||| |||||| | ||||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
13465046 |
aaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaacatccactataatgataatgggaatacaa |
13465145 |
T |
|
| Q |
207 |
-atcttcaccctcaggtgga |
225 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
13465146 |
caagttcaccctcaggtgga |
13465165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 17845969 - 17845847
Alignment:
| Q |
102 |
acacaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaa |
201 |
Q |
| |
|
|||||| | |||||||| ||||||||||||| ||||||||| ||||||||||||| ||||| | | ||||||||| ||||||||||| ||||||| || |
|
|
| T |
17845969 |
acacaagagaattttagagtggaaaaccttcccaatgtgaggaaggaaaaaccacaggacctttggacctcttaaacttccactataatgataatggaaa |
17845870 |
T |
|
| Q |
202 |
tacaa-atcttcaccctcaggtg |
223 |
Q |
| |
|
||||| | ||||||||| ||||| |
|
|
| T |
17845869 |
tacaacaacttcacccttaggtg |
17845847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 119 - 288
Target Start/End: Original strand, 8252686 - 8252853
Alignment:
| Q |
119 |
cgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctc |
218 |
Q |
| |
|
|||||||||||||||||| |||||||||| | |||||| |||| | ||||||| || || | ||||||||| ||||||||||| ||||| | | |
|
|
| T |
8252686 |
cgtggaaaaccttctcaacgtgagtaaggta------cgggactcgtaagtctcttaactcctcaatgtaataataacgggaatacaaagcttcatcttt |
8252779 |
T |
|
| Q |
219 |
aggtggacgtaacta----tgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctct |
288 |
Q |
| |
|
|| ||||| ||| || ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
8252780 |
agatggacttaattaattatgtatctcaatttgtagatacaactatcataaattgactcactatatttttctct |
8252853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 24379370 - 24379487
Alignment:
| Q |
111 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-a |
207 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || ||||||||||||||| | | ||||||||||| | ||||||||||| ||||| ||||||||| | |
|
|
| T |
24379370 |
aattttaacgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaacttccactataatgataataggaatacaaca |
24379469 |
T |
|
| Q |
208 |
tcttcaccctcaggtgga |
225 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
24379470 |
acttcacccttaggtgga |
24379487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 27341025 - 27341120
Alignment:
| Q |
111 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||||| || |||| ||| ||||||| ||||||| |
|
|
| T |
27341025 |
aattttagcgtggaaaaccttctcaatgtaagaaaggaaaaaccacgggacccttgtacctcttaaacttctactacaatgataatggaaatacaa |
27341120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 24380163 - 24380113
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggca |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24380163 |
tgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca |
24380113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 24379278 - 24379347
Alignment:
| Q |
27 |
gtgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat |
98 |
Q |
| |
|
||||||| ||||| || ||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
24379278 |
gtgttggaaaatgtctacataatttctctcctccgtgaacttaaaataggcac--tagtggaaacgtaaaat |
24379347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 38994151 - 38994204
Alignment:
| Q |
111 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggaccc |
163 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| || |||||||||||||||||| |
|
|
| T |
38994151 |
aattttaacgtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccc |
38994204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 257; Significance: 1e-142; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 28 - 422
Target Start/End: Complemental strand, 50603403 - 50603003
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
127 |
Q |
| |
|
|||||||||||||| | | |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50603403 |
tgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacactttagcgaaaacgtaaaatgacacacaataaaattttagcgtggaaaa |
50603304 |
T |
|
| Q |
128 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacg |
227 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |
|
|
| T |
50603303 |
ccttctcaatgtgagtaagaaaaaaccacggaacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcacctttagatggacc |
50603204 |
T |
|
| Q |
228 |
taactatgtatctcaatttgtagatacaactctc--acaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaac |
325 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50603203 |
taactatatatctcaatttgtagatacaactctcatacaaattggctcactatatttttctct--cactcttatgaggaactttctatttttctctcaac |
50603106 |
T |
|
| Q |
326 |
tctatgtgagtgaggattg-----tgttgtggtgtgttt-cattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttgg |
419 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
50603105 |
tctgtgtgagtgaggattgtgctatgttgtggtgtgtttgctttgctgaagctcttctctatttatagagagaaatgaaccgtaagcattaaatgcttgg |
50603006 |
T |
|
| Q |
420 |
ttc |
422 |
Q |
| |
|
||| |
|
|
| T |
50603005 |
ttc |
50603003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 641 - 1065
Target Start/End: Original strand, 54967873 - 54968300
Alignment:
| Q |
641 |
gattagtttgaggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctctgttgtcattgg |
740 |
Q |
| |
|
||||| |||| |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
54967873 |
gattaatttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttctcattgg |
54967972 |
T |
|
| Q |
741 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaatt |
840 |
Q |
| |
|
|||||| |||||||| || || || |||| | |||||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||| || || |
|
|
| T |
54967973 |
tgtgaactttctctactttcaacaatttactttccaacacatcacgaatccagtgatacctcacatcaatgtgttttgatctggagtggtatgttgagtt |
54968072 |
T |
|
| Q |
841 |
cttgctaaggtgaattgcactttgactatcacaatagaaaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatct-c |
939 |
Q |
| |
|
|||||| || |||||||| || ||||| || ||||||| |||||||||||||||| | |||||||||||||| ||||| ||||||||||||| |||| | |
|
|
| T |
54968073 |
cttgctgagatgaattgcgctctgactgtcgcaatagagaacataactttcttgactttggcctaactcttgcaggaacttcttcatccacaggatctcc |
54968172 |
T |
|
| Q |
940 |
ttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacgcacttttgtagtcgcga-tggcatgagacagctccccctgc-agag |
1037 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||| ||| || || ||||| |||||||||||||| | || |
|
|
| T |
54968173 |
ttacaaccttcagtgattgcgatgtattcagcttctgtggtactcaaagcaatgcacttttgtaatcgtgattgccatgaaacagctccccctgcaaaag |
54968272 |
T |
|
| Q |
1038 |
taatcaaatatccggatgtagattttct |
1065 |
Q |
| |
|
| |||||||||||||| ||||||||||| |
|
|
| T |
54968273 |
tgatcaaatatccggaagtagattttct |
54968300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 44782524 - 44782733
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
44782524 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt |
44782620 |
T |
|
| Q |
117 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
212 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||||||||||| | | ||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
44782621 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaacttc |
44782720 |
T |
|
| Q |
213 |
accctcaggtgga |
225 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
44782721 |
acccttaggtgga |
44782733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 54967210 - 54967419
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
54967210 |
tgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcact--agcggaaacgtgaaataaaagcgtaatgacaca-aagagaatttt |
54967306 |
T |
|
| Q |
117 |
agcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaggcctctt--aaatctccactataataataatgggaatacaa-atcttc |
212 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||||||||||||| | |||||||| ||| ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
54967307 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttc |
54967406 |
T |
|
| Q |
213 |
accctcaggtgga |
225 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
54967407 |
acccttaggtgga |
54967419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 40 - 225
Target Start/End: Original strand, 54979854 - 54980051
Alignment:
| Q |
40 |
cctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattttagcgtggaaaac |
128 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||| |||||| || | ||||||||| |||||||| |
|
|
| T |
54979854 |
cctgcataatttccctcctccgtcaactcaaaataagcact--agcggaaacgtgaaataaaagtgtaatgacaca-aagagaattttagcatggaaaac |
54979950 |
T |
|
| Q |
129 |
cttctcaatgtgagtaa-ggaaaaaccacgggacccgtaggcctctt--aaatctccactataataataatgggaatacaa-atcttcaccctcaggtgg |
224 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||| | |||||||| ||| ||||||||||| ||||||||||||||| | ||||||||| |||||| |
|
|
| T |
54979951 |
cttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccttaggtgg |
54980050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 31725196 - 31725448
Alignment:
| Q |
26 |
agtgttgggaaatgcctgcataatttccctcctccgtgaactcaaaa-taggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtgga |
124 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||||||| |||||| |||||| ||||||||||||| || ||| |||| || || ||||| ||||| |
|
|
| T |
31725196 |
agtgttgggaaatgtctgcataattcaccttctccgtgaattcaaaaataggca-tttagcggaaacg-aatatgccacaaaa---aagtttagtgtgga |
31725290 |
T |
|
| Q |
125 |
aaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtgg |
224 |
Q |
| |
|
|||||||| ||| || |||||||||||||| | | ||| | |||| | |||| ||||| ||||||| |||||||||||||||| || |||||| |
|
|
| T |
31725291 |
aaaccttcacaacatgggtaaggaaaaaccaaacaatctatagatcccttagacatccaatataacaataatgagaatacaaatcttcacacttaggtgg |
31725390 |
T |
|
| Q |
225 |
acgtaactatgtatctcaatttgtagatacaactctcacaaattggctcactatattttt |
284 |
Q |
| |
|
|| | || |||||||||||||||||| |||| |||||||||||| | ||||||||||| |
|
|
| T |
31725391 |
accttacgatgtatctcaatttgtag--acaattctcacaaattgattaactatattttt |
31725448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 111 - 278
Target Start/End: Complemental strand, 39298908 - 39298736
Alignment:
| Q |
111 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa-atc |
209 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||||||||| |||||||||| | |||||||||| ||||||||||| |||| |||||||||| | | |
|
|
| T |
39298908 |
aattttagtgtgaaaaaccttctcaatgtgatgaaggaaaaatcacgggacccttgtgcctcttaaacttccactataatgataaagggaatacaacaac |
39298809 |
T |
|
| Q |
210 |
ttcaccctcaggtggacgtaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
278 |
Q |
| |
|
|||||||| ||||||| |||| ||| | |||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
39298808 |
ttcacccttaggtggatctaactacaatatatctctcaatttgtaaggac-actctcacaaattggctcactat |
39298736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 109 - 225
Target Start/End: Original strand, 18556392 - 18556511
Alignment:
| Q |
109 |
aaaattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| |||||||||| ||||||||||| | |||| |||||||| |
|
|
| T |
18556392 |
aaaattttagcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctcttaaacttccactataatgacaatgagaatacaa |
18556491 |
T |
|
| Q |
207 |
-atcttcaccctcaggtgga |
225 |
Q |
| |
|
| ||||||||| ||||||| |
|
|
| T |
18556492 |
caacttcacccttaggtgga |
18556511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 17645981 - 17645928
Alignment:
| Q |
28 |
tgttgggaaatg-cctgcataatttccctcctccgtgaactcaaaataggcact |
80 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
17645981 |
tgttgggaaatgacctccataatttccctcatccgtgaactcaaaatagacact |
17645928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 17645897 - 17645800
Alignment:
| Q |
107 |
acaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | || |||||||||||||| | | || ||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
17645897 |
acaaaattttagcgtggaaaaccttctcaatataa--aaaaaaaaaccacgggactcttgagcgtcttaaacttccactataatgataatgacaatacaa |
17645800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 28 - 400
Target Start/End: Original strand, 31151926 - 31152298
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
31151926 |
tgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaacataaaatgacacacaacaaaattttaatgtggaaaa |
31152025 |
T |
|
| Q |
128 |
ccttctcaatgtgagtaaggaaaa-accacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
226 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31152026 |
ccttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcagatggac |
31152125 |
T |
|
| Q |
227 |
gtaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaact |
326 |
Q |
| |
|
|||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31152126 |
ctaactacgtatctaaatttatagatacaactctcacaaattggcttactatatttttctctcacactcttacgaggaactctctatttttctctcaact |
31152225 |
T |
|
| Q |
327 |
ctatgtgagtgaggattgtgttgtggtgtg-tttcattgctgaaactcttctctatttatagagggttttgaacc |
400 |
Q |
| |
|
| || || | ||||||||||||||| || | |||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
31152226 |
cccgaggattgtg--ttgtgttgtggtgtgattgctttgctgaagctcttctctatttatagagagatttgaacc |
31152298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 654 - 1050
Target Start/End: Original strand, 22981815 - 22982214
Alignment:
| Q |
654 |
ttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctctgttgtcattggtgtgaattttctc |
753 |
Q |
| |
|
||||| |||| || ||||||||||| |||||||| ||||| ||||||||||||| |||||||||||| ||||||| || ||||||||||||| |||||| |
|
|
| T |
22981815 |
ttgcttccaatccagcagcttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctc |
22981914 |
T |
|
| Q |
754 |
tatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtga |
853 |
Q |
| |
|
|| || || || |||| |||||||||||||| ||| || || |||||||| || |||||||| || || || ||||||||||| |||||||| || ||| |
|
|
| T |
22981915 |
tactttcaacaatttactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatga |
22982014 |
T |
|
| Q |
854 |
attgcactttgactatcacaatagaaaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatct-cttacaaccttcag |
952 |
Q |
| |
|
|| ||||| ||||| || ||||||| |||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| |||| |||||||||||||| |
|
|
| T |
22982015 |
atcgcactctgactgtcgcaatagagaacatagcttttttgattctggcctaactcttgcaggaacttcttcatccacatgatctccttacaaccttcag |
22982114 |
T |
|
| Q |
953 |
tgattgcgatgtactctgcttctgtggtacttaaagcaacgcacttttgtagtcgcga-tggcatgagacagctccccctgc-agagtaatcaaatatcc |
1050 |
Q |
| |
|
|||||| |||||| || |||||| ||||||| ||||||||||| ||||||||||| || || || |||| |||||||||||| | ||||||||||||||| |
|
|
| T |
22982115 |
tgattgtgatgtattcagcttctatggtactcaaagcaacgcatttttgtagtcgtgattgccaagagatagctccccctgcaaaagtaatcaaatatcc |
22982214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 654 - 1050
Target Start/End: Complemental strand, 23806593 - 23806194
Alignment:
| Q |
654 |
ttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctctgttgtcattggtgtgaattttctc |
753 |
Q |
| |
|
||||| |||| || ||||||||||| |||||||| ||||| ||||||||||||| |||||||||||| ||||||| || ||||||||||||| |||||| |
|
|
| T |
23806593 |
ttgcttccaatccagcagcttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctc |
23806494 |
T |
|
| Q |
754 |
tatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtga |
853 |
Q |
| |
|
|| || || || |||| |||||||||||||| ||| || || |||||||| || |||||||| || || || ||||||||||| |||||||| || ||| |
|
|
| T |
23806493 |
tactttcaacaatttactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatga |
23806394 |
T |
|
| Q |
854 |
attgcactttgactatcacaatagaaaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatct-cttacaaccttcag |
952 |
Q |
| |
|
|| ||||| ||||| || ||||||| |||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| |||| |||||||||||||| |
|
|
| T |
23806393 |
atcgcactctgactgtcgcaatagagaacatagcttttttgattctggcctaactcttgcaggaacttcttcatccacatgatctccttacaaccttcag |
23806294 |
T |
|
| Q |
953 |
tgattgcgatgtactctgcttctgtggtacttaaagcaacgcacttttgtagtcgcga-tggcatgagacagctccccctgc-agagtaatcaaatatcc |
1050 |
Q |
| |
|
|||||| |||||| || |||||| ||||||| ||||||||||| ||||||||||| || || || |||| |||||||||||| | ||||||||||||||| |
|
|
| T |
23806293 |
tgattgtgatgtattcagcttctatggtactcaaagcaacgcatttttgtagtcgtgattgccaagagatagctccccctgcaaaagtaatcaaatatcc |
23806194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 22981710 - 22981504
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatgac-------acacaacaaaattttag |
118 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||| | ||||| | |||||||| |
|
|
| T |
22981710 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaattttag |
22981614 |
T |
|
| Q |
119 |
cgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
215 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
22981613 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacc |
22981514 |
T |
|
| Q |
216 |
ctcaggtgga |
225 |
Q |
| |
|
|| ||||||| |
|
|
| T |
22981513 |
cttaggtgga |
22981504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 23806698 - 23806904
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatgac-------acacaacaaaattttag |
118 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||| | ||||| | |||||||| |
|
|
| T |
23806698 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaattttag |
23806794 |
T |
|
| Q |
119 |
cgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
215 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
23806795 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacc |
23806894 |
T |
|
| Q |
216 |
ctcaggtgga |
225 |
Q |
| |
|
|| ||||||| |
|
|
| T |
23806895 |
cttaggtgga |
23806904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 104 - 287
Target Start/End: Original strand, 1111378 - 1111564
Alignment:
| Q |
104 |
acaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatct-ccactataataataatgggaat |
202 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||| | |||||||||| || ||||| | || | ||||||||||| | | |||||||||||| |||| |
|
|
| T |
1111378 |
acaacaaaattttagtgtagaaaaccttctgaatgtaaataaggaaaaatcatgggactcataagtctcttaaatctactataataataataatgagaat |
1111477 |
T |
|
| Q |
203 |
acaaatcttcaccctcaggtggacgtaactatgtatctcaatttg--tagatacaactctcacaaattggctcactatatttttctc |
287 |
Q |
| |
|
||||| |||||||| | || || |||||||||||||||||||| |||||| | ||||||||||||| || |||||||||||| |
|
|
| T |
1111478 |
acaaactttcacccttacgtaaacctaactatgtatctcaatttgtatagatatatttctcacaaattggttccttatatttttctc |
1111564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 600 - 713
Target Start/End: Original strand, 1104988 - 1105101
Alignment:
| Q |
600 |
ccaacaattctccccctccagccaaagggaaactatccttagattagtttgaggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttt |
699 |
Q |
| |
|
||||||||| || ||||| ||| ||| | ||||||| ||||||||| |||| | |||||| |||||||||| | |||| |||| |||| ||||| ||| |
|
|
| T |
1104988 |
ccaacaattatctccctctagctaaacgaaaactatacttagattaatttgggattgctgtcaagcctgcaattgctttataaaaatctaacttcttttt |
1105087 |
T |
|
| Q |
700 |
tggtagagcttttg |
713 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1105088 |
tggtagagcttttg |
1105101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 745 - 834
Target Start/End: Original strand, 1105112 - 1105201
Alignment:
| Q |
745 |
aattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgt |
834 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||| | || ||||||| || |||| |||||||||||| ||| |||||||||| |
|
|
| T |
1105112 |
aattttctctatttaaagcagtttattctctaacacgtcatgtattcaatgatttcttacattgatgtgttttgatcttaaatggtatgt |
1105201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 641 - 1065
Target Start/End: Complemental strand, 2274 - 1847
Alignment:
| Q |
641 |
gattagtttgaggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctctgttgtcattgg |
740 |
Q |
| |
|
|||||||||| |||||||||||| || ||||||||||| |||||||| ||||||||||||||||||| ||| |||||||| ||||||| || ||||||| |
|
|
| T |
2274 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactcaatcttctcttttggtagaggtttggtcatcatgtctgctccattctcattgg |
2175 |
T |
|
| Q |
741 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaatt |
840 |
Q |
| |
|
|||||| |||||||| || || || |||| |||||||||||||||||||||| |||||||||||||| || |||||||| || || || ||||| || || |
|
|
| T |
2174 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcaatatgttttgatctggagtgatatgttgagtt |
2075 |
T |
|
| Q |
841 |
cttgctaaggtgaattgcactttgactatcacaatagaaaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatct-c |
939 |
Q |
| |
|
|||||| || ||||| || |||||||| || ||||||| |||||| ||||||||||| |||||||||||||||||||| ||||||||||| | |||| | |
|
|
| T |
2074 |
cttgctgagatgaatcgcgctttgactgtcgcaatagagaacatagctttcttgattttggcctaactcttgtaggaacttcttcatccataggatctcc |
1975 |
T |
|
| Q |
940 |
ttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacgcacttttgtagtcgcga-tggcatgagacagctccccctgc-agag |
1037 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| |||||||| ||||||| ||||||||||| ||| || || ||||| |||||||||||||| | || |
|
|
| T |
1974 |
ttacaaccttcagtgattgcgatgtattcagctttcgtggtactcaaagcaatgcacttttgtaatcgtgattgccatgaaacagctccccctgcaaaag |
1875 |
T |
|
| Q |
1038 |
taatcaaatatccggatgtagattttct |
1065 |
Q |
| |
|
| |||||||||||||| ||||||||||| |
|
|
| T |
1874 |
tgatcaaatatccggaagtagattttct |
1847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 2936 - 2727
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
116 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||| |||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
2936 |
tgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt |
2840 |
T |
|
| Q |
117 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
212 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
2839 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
2740 |
T |
|
| Q |
213 |
accctcaggtgga |
225 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
2739 |
acccttaggtgga |
2727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 3e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 28 - 243
Target Start/End: Original strand, 29706854 - 29707069
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
127 |
Q |
| |
|
|||||| |||||||| ||||||||| ||| |||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||||||| | |||||| |
|
|
| T |
29706854 |
tgttggaaaatgcctccataatttctctcatccgtgaacttaaaatatgcactttagcaaaaatgtaaaatgacacacaacaaaattttagtgaggaaaa |
29706953 |
T |
|
| Q |
128 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacg |
227 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||| | ||| |||||||||||||||||||||||||||||| | | |||||||||||||| ||||||| |
|
|
| T |
29706954 |
ccttctcaatatgagtaaggaacaatcacgggactcatagacctcttaaatctccactataataataatggaataaaaaatcttcaccctcgggtggacc |
29707053 |
T |
|
| Q |
228 |
taactatgtatctcaa |
243 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29707054 |
taactatgtatctcaa |
29707069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 27642225 - 27642132
Alignment:
| Q |
111 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaac-cacgggacccgtaggcctcttaaatctccactataataataatgggaata |
203 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| ||||||||| |||||| || || |||||||| |||||||||||||||||||||||| |
|
|
| T |
27642225 |
aattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtctcttaaacttccactataataataatgggaata |
27642132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 88; Significance: 9e-42; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 26514 - 26674
Alignment:
| Q |
44 |
cataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaaccttctcaatgtgagt |
143 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
26514 |
cataatctccctccttcgtgaactcaaaatagacactttagcgaaaacgtaaaataacac--aacaaaattttagggtggaaaaccttttcaatgtgagt |
26611 |
T |
|
| Q |
144 |
aaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa |
206 |
Q |
| |
|
|||||||||| ||||||||| | ||||||||||| |||||| |||| |||| | |||||||| |
|
|
| T |
26612 |
aaggaaaaactacgggacccttgggcctcttaaacttccactctaatgataacgagaatacaa |
26674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 41481815 - 41481606
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
41481815 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt |
41481719 |
T |
|
| Q |
117 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
212 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
41481718 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
41481619 |
T |
|
| Q |
213 |
accctcaggtgga |
225 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
41481618 |
acccttaggtgga |
41481606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 36167813 - 36167605
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || | |||||| |
|
|
| T |
36167813 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt |
36167717 |
T |
|
| Q |
117 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
212 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||||||||| |||||| | ||||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
36167716 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccac-ggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
36167618 |
T |
|
| Q |
213 |
accctcaggtgga |
225 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
36167617 |
acccttaggtgga |
36167605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 18951129 - 18951326
Alignment:
| Q |
33 |
ggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat------gacacacaacaaaattttagcgtggaaa |
126 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | |||| | | ||| ||||||||| |||||| |
|
|
| T |
18951129 |
ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcact--agcggaaacatgaaatataagcgtaatgacacagaattttagcatggaaa |
18951226 |
T |
|
| Q |
127 |
accttctcaatgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcaccctcaggt |
222 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| |||| | ||| ||||||| | ||||||||||| ||||||||||||||| | ||||||||| |||| |
|
|
| T |
18951227 |
accttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggt |
18951326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 600 - 629
Target Start/End: Complemental strand, 12935084 - 12935055
Alignment:
| Q |
600 |
ccaacaattctccccctccagccaaaggga |
629 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12935084 |
ccaacaattctccccctccagccaaaggga |
12935055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 18116885 - 18116930
Alignment:
| Q |
29 |
gttgggaaatgcctgcataatttccctcctccgtgaactcaaaata |
74 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||||| |||||| |
|
|
| T |
18116885 |
gttgggaaatgcctgcataatttacctcgtctgtgaacttaaaata |
18116930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 5e-34; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 9757212 - 9757422
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
116 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
9757212 |
tgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt |
9757308 |
T |
|
| Q |
117 |
agcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaggcctcttaaatc---tccactataataataatgggaatacaa-atctt |
211 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
9757309 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaactt |
9757408 |
T |
|
| Q |
212 |
caccctcaggtgga |
225 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
9757409 |
cacccttaggtgga |
9757422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 600 - 931
Target Start/End: Original strand, 25003452 - 25003762
Alignment:
| Q |
600 |
ccaacaattctccccctccagccaaagggaaactatccttagattagtttgaggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttt |
699 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||| | | ||||||||| |||||||| ||| | || || |||||||| || | || || |
|
|
| T |
25003452 |
ccaacaattctctccctccagccaaagggaaaatatcttcaaattagtttggggttgctgtatagctttcatattctttacaaaccttt------tcatt |
25003545 |
T |
|
| Q |
700 |
tggtagagcttttgtcatcatatctgctctgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatac |
799 |
Q |
| |
|
|||||||| |||||||||||||| || | ||||||| ||||| |||||||| ||||||| ||| | ||||| |||||||||| || ||| |
|
|
| T |
25003546 |
tggtagagtttttgtcatcatatttgtccctttgtcatcggtgt---ttttctctttttgcagtagtct-ttctctaacacatcac-------at--tac |
25003632 |
T |
|
| Q |
800 |
ctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagaaaacataactttcttgattct |
899 |
Q |
| |
|
|||||||| |||||||| |||||||| || |||||||| || || || |||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
25003633 |
ctcacatctatgtgttt-gaccttgattg-tatgtcgagttatttctgaggtgaattgcactttgactatcacaatagggaacataactttgttgattca |
25003730 |
T |
|
| Q |
900 |
ggcctaactcttgtaggaatttcttcatccac |
931 |
Q |
| |
|
||||| ||||||| | ||| |||||||||||| |
|
|
| T |
25003731 |
ggcctgactcttgcatgaacttcttcatccac |
25003762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 42682924 - 42683038
Alignment:
| Q |
111 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-at |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| |||||||||| | | ||||||||| | ||||||||||| ||||||||||||||| | |
|
|
| T |
42682924 |
aatttcagcgtggaaaaccttctcaatgtgagaaaggaaaaatcacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaa |
42683023 |
T |
|
| Q |
209 |
cttcaccctcaggtg |
223 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
42683024 |
cttcacccttaggtg |
42683038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 37286972 - 37287069
Alignment:
| Q |
109 |
aaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa |
206 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| || || ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
37286972 |
aaaattttagcatggaaaaccttctcaatgtgaaaaaggaaaaatcacgggacccttaagcatcttaaacttccactataataataataagaatacaa |
37287069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 960 - 1006
Target Start/End: Original strand, 25004185 - 25004231
Alignment:
| Q |
960 |
gatgtactctgcttctgtggtacttaaagcaacgcacttttgtagtc |
1006 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25004185 |
gatgtattatgcttctgtggtacttaaagcaacacacttttgtagtc |
25004231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 599 - 629
Target Start/End: Complemental strand, 14178355 - 14178325
Alignment:
| Q |
599 |
accaacaattctccccctccagccaaaggga |
629 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14178355 |
accaacaattctccccctccagccaaaggga |
14178325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 600 - 629
Target Start/End: Original strand, 28607519 - 28607548
Alignment:
| Q |
600 |
ccaacaattctccccctccagccaaaggga |
629 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28607519 |
ccaacaattctccccctccagccaaaggga |
28607548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 28 - 206
Target Start/End: Original strand, 342217 - 342404
Alignment:
| Q |
28 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat---------gacacacaacaaaattttag |
118 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||| |||||| | |||||||| |
|
|
| T |
342217 |
tgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcac--tagcagaaacgtgaaatataagcgtaatgacacaa-agaattttag |
342313 |
T |
|
| Q |
119 |
cgtggaaaaccttctcaatgtgagtaa-ggaa-aaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa |
206 |
Q |
| |
|
|||| |||||||||||||| |||| || |||| ||||||||||| || | ||||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
342314 |
cgtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaacttccactataatgataatgggaatacaa |
342404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 37038035 - 37037942
Alignment:
| Q |
113 |
ttttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||| | |||||||| |||||| |||||||| |
|
|
| T |
37038035 |
ttttagcgaggaaaaccttctcaatgtgagaaaggagaaaccacgggacccttgggcctcttaaactttcactataacgataatgagaatacaa |
37037942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 37038112 - 37038074
Alignment:
| Q |
42 |
tgcataatttccctcctccgtgaactcaaaataggcact |
80 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37038112 |
tgcataatttctctcctccgtgaactcaaaataggcact |
37038074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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