View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4705-Insertion-2 (Length: 807)
Name: NF4705-Insertion-2
Description: NF4705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4705-Insertion-2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 592; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 8 - 619
Target Start/End: Original strand, 36331826 - 36332437
Alignment:
| Q |
8 |
gtttcttagtcattatcatccctgtctacgaccgaatatgcgtgccagttcttcgtaaattcaccggcataccaaccggagtcacgcacctgcagcgcat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36331826 |
gtttcttagtcattatcatccctgtctacgaccgaatatgcgtgccagttcttcgtaaattcaccggcataccaaccggagtcacgcacctgcagcgcat |
36331925 |
T |
|
| Q |
108 |
aggtgtcggcctaatactatcctgcatctcgatggcaattgcagcaatcatagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36331926 |
aggtgtcggcctaatactatcctgcatctcgatggcaattgcagcaatcatagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgct |
36332025 |
T |
|
| Q |
208 |
gttccaggagttcaaccattacctttgagtatattttggctttcttttcagtactttgtgtttggtatagctgatatgtttacctatgtgggacttcttg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36332026 |
gttccaggagttcaaccattacctttgagtatattttggctttcttttcagtactttgtgtttggtatagctgatatgtttacctatgtgggacttcttg |
36332125 |
T |
|
| Q |
308 |
agttcttctattcagaggcaccaaaagggcttaaatctacatcaacatgcttcctttggagctctatggcacttggctattttctaagcagcattatggt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36332126 |
agttcttctattcagaggcaccaaaagggcttaaatctacatcaacatgcttcctttggagctctatggcacttggctattttctaagcagcattatggt |
36332225 |
T |
|
| Q |
408 |
gcaaattgtgaatagtgctaccaagaatgttactgcaagtggtggatggttagcagggaacaatattaacagaaaccatttgaacctattctacttgttg |
507 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
36332226 |
gcaaattgtgaataatgctaccaagaatgttactgcaagtggtggatggttggcagggaacaatattaacagaaaccatttgaaccttttctacttgttg |
36332325 |
T |
|
| Q |
508 |
ctttctttgatcagcttgatcaatttctttgtctatttggtaatttcaaagaggtataattataggcctcaaggtcctactgttaaaggtgtggattctc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36332326 |
ctttctttgatcagcttgatcaatttctttgtttatttggtaatttcaaagaggtataagtataggcctcaaggtcctactgttaaaggtgtggattctc |
36332425 |
T |
|
| Q |
608 |
aatagggaatat |
619 |
Q |
| |
|
|||||||||||| |
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|
| T |
36332426 |
aatagggaatat |
36332437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 9 - 619
Target Start/End: Original strand, 36324566 - 36325176
Alignment:
| Q |
9 |
tttcttagtcattatcatccctgtctacgaccgaatatgcgtgccagttcttcgtaaattcaccggcataccaaccggagtcacgcacctgcagcgcata |
108 |
Q |
| |
|
||||||| || |||| |||||| ||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||| | || ||| ||||||| ||| |
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|
| T |
36324566 |
tttcttaatctttataatccctttctacgaccgaatctgcgtgccacttctccgtaaattcactggcataccaaccggcattactcacttgcagcgaata |
36324665 |
T |
|
| Q |
109 |
ggtgtcggcctaatactatcctgcatctcgatggcaattgcagcaatcatagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgctg |
208 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
36324666 |
ggcgttggcctaatactatcctgcatctcgatggcaatcgcggcaatcatagaagtgaaaagaaaaaatgtagctagagataataacatgcttgatgctg |
36324765 |
T |
|
| Q |
209 |
ttccaggagttcaaccattacctttgagtatattttggctttcttttcagtactttgtgtttggtatagctgatatgtttacctatgtgggacttcttga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36324766 |
ttccaggagttcaaccattacctttgagtatattttggctttcttttcagtactttgtatttggtatagctgatatgtttacctatgtgggacttcttga |
36324865 |
T |
|
| Q |
309 |
gttcttctattcagaggcaccaaaagggcttaaatctacatcaacatgcttcctttggagctctatggcacttggctattttctaagcagcattatggtg |
408 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36324866 |
gttcttctattcagaagcaccaaaagggcttaaatctacttcaacatgctttctttggagctctatggcacttggctattttctaagcagcattatggtg |
36324965 |
T |
|
| Q |
409 |
caaattgtgaatagtgctaccaagaatgttactgcaagtggtggatggttagcagggaacaatattaacagaaaccatttgaacctattctacttgttgc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
36324966 |
caaattgtgaatagtgctaccaagaatgttactgcaagtggtggatggttggcagggaacaatattaacagaaaccatttgaatctgttctacttgttgc |
36325065 |
T |
|
| Q |
509 |
tttctttgatcagcttgatcaatttctttgtctatttggtaatttcaaagaggtataattataggcctcaaggtcctactgttaaaggtgtggattctca |
608 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||| | | ||||||||||||||||||| |
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|
| T |
36325066 |
tttctttactgagcttgatcaatttctttgtctatttggtagtttcaaagaggtacaagtataggcctcaaggtcatgcaattaaaggtgtggattctca |
36325165 |
T |
|
| Q |
609 |
atagggaatat |
619 |
Q |
| |
|
|||| |||||| |
|
|
| T |
36325166 |
atagagaatat |
36325176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 621 - 729
Target Start/End: Original strand, 36332493 - 36332602
Alignment:
| Q |
621 |
tgtcaaacgtaagtgaagaaatagaggtttgcacgtttgttttccttgcacgtctgttaagttagtggctattgttttaaagaaattaatttgaag-ttt |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36332493 |
tgtcaaacgtaagtgaagaaatagaggtttgcacgtttgttttccttgcacgtctgttaagttagtggctattgttttaaagaaattaatttgaagtttt |
36332592 |
T |
|
| Q |
720 |
attgtacctc |
729 |
Q |
| |
|
|||||||||| |
|
|
| T |
36332593 |
attgtacctc |
36332602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 752 - 794
Target Start/End: Original strand, 36332642 - 36332684
Alignment:
| Q |
752 |
aaatagaatcattcaagcaattcaccttaaaattcttacatat |
794 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36332642 |
aaatagaatcattcaagcaattcaccttaaaattcttacatat |
36332684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 10 - 582
Target Start/End: Original strand, 5459829 - 5460398
Alignment:
| Q |
10 |
ttcttagtcattatcatccctgtctacgaccgaatatgcgtgccagttcttcgtaaattcaccggcataccaaccggagtcacgcacctgcagcgcatag |
109 |
Q |
| |
|
|||||| ||||| || | ||| |||||||||| || | ||| || ||| | |||||||||||||| || |||||||| || || ||| |||| || |||| |
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|
| T |
5459829 |
ttcttaatcattctcgtacctatctacgaccgcattttcgttcctgttatacgtaaattcaccggtattccaaccggtgttacacacttgcaacgtatag |
5459928 |
T |
|
| Q |
110 |
gtgtcggcctaatactatcctgcatctcgatggcaattgcagcaatcatagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgctgt |
209 |
Q |
| |
|
|||| || || ||||| | | | | || ||||| | || |||| |||||||| |||||||||| || || | ||||||||||||||||||||| | |
|
|
| T |
5459929 |
gtgttggtcttatacttgcttccgtatcaatggctgtcgcttcaattatagaagtaaaaagaaaaagagtggccaatgacaataacatgcttgatgcttt |
5460028 |
T |
|
| Q |
210 |
tccaggagttcaaccattacctttgagtatattttggctttcttttcagtactttgtgtttggtatagctgatatgtttacctatgtgggacttcttgag |
309 |
Q |
| |
|
|||| | ||| ||||| ||| | || | ||||||||||||||||||||| || | ||||| |||||||| || || |||||| | || || ||| || |
|
|
| T |
5460029 |
accagtatatcagccattgcctataagcacattttggctttcttttcagtatttcatatttggcatagctgacatattcacctatattggtctccttcag |
5460128 |
T |
|
| Q |
310 |
ttcttctattcagaggcaccaaaagggcttaaatctacatcaacatgcttcctttggagctctatggcacttggctattttctaagcagcattatggtgc |
409 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||| | ||| |||| |
|
|
| T |
5460129 |
tttttctattcagaggcaccaaaaggacttaaatctacatcaacttgcttcctttggacttcaatggcacttggatattttctaagtaccatagtggtta |
5460228 |
T |
|
| Q |
410 |
aaattgtgaatagtgctaccaagaatgttactgcaagtggtggatggttagcagggaacaatattaacagaaaccatttgaacctattctacttgttgct |
509 |
Q |
| |
|
| | | ||| |||| |||||| | ||| |||||| || |||||| |||||| ||||| || ||||| ||| | ||||| ||||||||||| || |
|
|
| T |
5460229 |
agtgtatcaatggtgccaccaagca---taccaaaagtgggggttggttaatagggaataatatcaatagaaatcatctaaacctgttctacttgttcct |
5460325 |
T |
|
| Q |
510 |
ttctttgatcagcttgatcaatttctttgtctatttggtaatttcaaagaggtataattataggcctcaaggt |
582 |
Q |
| |
|
||| | | ||||||||||| ||||||||||||||| | |||||||||| || || || || ||||||||| |
|
|
| T |
5460326 |
ttccattgtgagcttgatcaacttctttgtctatttgtttgtttcaaagagatacaaatacagacctcaaggt |
5460398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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