View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4705-Insertion-3 (Length: 653)
Name: NF4705-Insertion-3
Description: NF4705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4705-Insertion-3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 6 - 653
Target Start/End: Original strand, 34248427 - 34249073
Alignment:
| Q |
6 |
cacatgtcccatagtgtaatgggatagcttcacaagaacctaatgcatgccatgaagaagagtgaagtaatataagggtgtccattgtccaaccccacaa |
105 |
Q |
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| T |
34248427 |
cacatgtcccatagtgtaatgggatagcttcacaagaacctaatgcatgccatgaagaagagtgaagtaatat---ggtgtccattgtccaaccccacaa |
34248523 |
T |
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| Q |
106 |
acattagatattacattaattaaggtcataaaggtgtacta--gatagacctaactcctaaggtcaatcatagccaaacaaaaactccccattttcattt |
203 |
Q |
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| T |
34248524 |
acatta------------attaaggtcataaaagtgtactatagatagacctaactcctaaggtcaatcatagccaaacaaaaactccccattttcattt |
34248611 |
T |
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| Q |
204 |
tacactacaagtacaagcaatcactccttcttttccaagtgaaccaaccacaaacctccgtcaacattaaggtatgccactcaaactatatatttgattc |
303 |
Q |
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| T |
34248612 |
tacactacaagtacaagcaatcactccttcttttccaagtgaaccaaccacaaacctccgtcaacattaaggtatgccactcaaactatatatttgattc |
34248711 |
T |
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| Q |
304 |
ctatcactactatatataacatgcctttcaattctagtattatcctattcacataaattattaatactctaaaatattggacgtacactttttagtttca |
403 |
Q |
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| T |
34248712 |
ctatcactactatatataacatgcctttcaattctagtattatcctattcacataaattattaatactctaaaatattggacgtacactttttagtttca |
34248811 |
T |
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| Q |
404 |
aatctcaaattattacacaccagaataattgtttccaattcattaaataactcataataatatcattcaagttccaaagactagttcataggtctatttc |
503 |
Q |
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| T |
34248812 |
aatctcaaattattacacaccagaataattgtttccaattcattaaataactcataataatatcattcaagttccaaagactagttcataggtctatttc |
34248911 |
T |
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| Q |
504 |
aatggagaaagtaaaaccagttattatatcatcaccaactcaaactcataggtgctgcagccgttgga---attatattc---------catcatcatca |
591 |
Q |
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| T |
34248912 |
aatggagaaagtaaaaccagttattatatcatcaccaactcaaactcataggtgctgcagccgttggaattattatattccctcatcatcatcatcatca |
34249011 |
T |
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| Q |
592 |
tcatttcattcacattttgtttcttttactctttcaacaacctgcagggttaactctctatc |
653 |
Q |
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| T |
34249012 |
tcatttcattcacattttgtttcttttactctttcaacaacctgcagggttaactctctatc |
34249073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 499 - 650
Target Start/End: Original strand, 34258038 - 34258191
Alignment:
| Q |
499 |
atttcaatggagaaagtaaaaccagttattatatcatcaccaactcaaactcataggtgctgcagccgttggaattatattc---catcatcatcatcat |
595 |
Q |
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| T |
34258038 |
atttcaatggaggaagttaaac-atttattattttatcaccaactcaaactcataggtgctgcaaccattggaattatattggctcatcatcatcatcat |
34258136 |
T |
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| Q |
596 |
ttcattcacattttgtttcttttactctttcaacaacctgcagggttaactctct |
650 |
Q |
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| T |
34258137 |
ttcattcccattttgtttcttttactctttcaacaacctacagggttaactctct |
34258191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 34257641 - 34257741
Alignment:
| Q |
145 |
tagatagacctaactcctaaggtcaatcatagccaaacaaaaactccccattttcattttacactacaagtacaagcaatcactccttcttttccaagtg |
244 |
Q |
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| T |
34257641 |
tagatagacctaacttctaaggtcaggcattgccaaacaaaaactccccattttcattttacactacaag--caagcaagcactccgtcttttccaagtg |
34257738 |
T |
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| Q |
245 |
aac |
247 |
Q |
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| T |
34257739 |
aac |
34257741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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