View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4705-Insertion-4 (Length: 516)
Name: NF4705-Insertion-4
Description: NF4705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4705-Insertion-4 |
 | |
|
| [»] chr6 (8 HSPs) |
| |
|
| [»] scaffold0256 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 6 - 516
Target Start/End: Complemental strand, 16571291 - 16570780
Alignment:
| Q |
6 |
caagaacaacaaacataggttcatcctggagcctctcaacatattgacgcatgtaagaaactcagcatttatgttttctaagaaatcaactaagcttcgc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16571291 |
caagaacaacaaacataggttcatcctggagcctctcaacatattgacgcatgtaagaaactcagcatttatgttttctaagaaatcaactaagcttcgc |
16571192 |
T |
|
| Q |
106 |
caaacacaaattggtccgtta--gtcggaccctta-cttagtttaattctcagctggctcaactgaatcatcagcctttatgtttggttgctgcgctaga |
202 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16571191 |
caaacacgaattggtccgttatagtcggacccttaacttagtttaattctcatctggctcaactgaatcatcagcctttatgtttggttgctgcgctaga |
16571092 |
T |
|
| Q |
203 |
atatcgagaatgacaaaaatattctgcacacattttttccacacatatataagcacatgcccaccaacgaggcttaaattaacatcatactgataggtag |
302 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
16571091 |
atatcgagaatgaccaaaatattctgcacacattttttccacacatata--agcacatgcccaccaacgaggcttgaattaacatcaaactgataggtag |
16570994 |
T |
|
| Q |
303 |
gtattatagccaattttgcagaaaccacactaaaaagaatttgcagcttttaggcaggtattatagccaattttgataggtaggtaactgttcaacttgt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16570993 |
gtattatagccaattttgcagaaaccacactaaaaagaatttgcagcttttatgcaggtattatagccaattttgataggtaggtaactgttcaacttgt |
16570894 |
T |
|
| Q |
403 |
tcaaaccttccagttttattccttcccctagccgccacaagatctttgaacttcttgttaaaagtgtcccatgtgatggatggatcagcatcgataatct |
502 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16570893 |
tcaaaccttccagttttattccttctcctagccgccacaagatctttgaacttcttgttaaaagtgtcccatgtgatggatggatcagcatcgataatct |
16570794 |
T |
|
| Q |
503 |
tatcatggctctaa |
516 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
16570793 |
tatcatggctctaa |
16570780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 79 - 295
Target Start/End: Complemental strand, 16873113 - 16872895
Alignment:
| Q |
79 |
ttttctaagaaatcaactaagcttcgccaaacacaaattggtccgtta--gtcggacccttacttagtttaattctcagctggctcaactgaatcatcag |
176 |
Q |
| |
|
|||| ||||||| ||||||| ||| |||||||| ||| | ||||||| ||||| ||||| |||||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
16873113 |
ttttttaagaaagaaactaagtttccccaaacacgaatcgatccgttatagtcggcccctttcttagtttcattctcatctggctcctctgaatcatcaa |
16873014 |
T |
|
| Q |
177 |
cctttatgtttggttgctgcgctagaatatcgagaatgacaaaaatattctgcacacattttttccacacatatataagcacatgcccaccaacgaggct |
276 |
Q |
| |
|
| ||||||||||| | ||| | ||||||||||||||||| || |||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||| |
|
|
| T |
16873013 |
catttatgtttggatattgcacaagaatatcgagaatgaccaacatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggct |
16872914 |
T |
|
| Q |
277 |
taaattaacatcatactga |
295 |
Q |
| |
|
| ||||||||||| ||||| |
|
|
| T |
16872913 |
tgaattaacatcaaactga |
16872895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 366 - 501
Target Start/End: Original strand, 17040305 - 17040441
Alignment:
| Q |
366 |
tagccaattttgataggtaggtaa-ctgttcaacttgttcaaaccttccagttttattccttcccctagccgccacaagatctttgaacttcttgttaaa |
464 |
Q |
| |
|
|||||||||| | ||||||||||| |||||||||||| |||| |||||||| ||| ||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
17040305 |
tagccaatttagctaggtaggtaagctgttcaacttgctcaagccttccagatttcttccttcccctagccgccacaagctgtttgaacttcttgttaac |
17040404 |
T |
|
| Q |
465 |
agtgtcccatgtgatggatggatcagcatcgataatc |
501 |
Q |
| |
|
||||| ||||||||| || |||||||||||||||||| |
|
|
| T |
17040405 |
agtgtgccatgtgatcgacggatcagcatcgataatc |
17040441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 320 - 500
Target Start/End: Complemental strand, 16579575 - 16579390
Alignment:
| Q |
320 |
gcagaaaccacactaaaaagaatttgcagcttttaggcaggtattat-agccaattttgataggtaggtaac---tgttcaacttgttcaaaccttccag |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||| || | ||||||||||||| ||||||||| || |||||||||||||||||| ||| |
|
|
| T |
16579575 |
gcagaaaccacactaaaaagaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcag |
16579476 |
T |
|
| Q |
416 |
ttttattccttcccctagccgccacaagatctttgaacttcttgttaaa-agtgtcccatgtgatggatggatcagcatcgataat |
500 |
Q |
| |
|
|||| |||||||||||| | |||||||| |||||||||||||||||| | | ||||||||||| ||||||| |||||||||||| |
|
|
| T |
16579475 |
ttttcttccttcccctaactgccacaagccatttgaacttcttgttaaacaatttcccatgtgatcgatggatgagcatcgataat |
16579390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 79 - 295
Target Start/End: Complemental strand, 16579794 - 16579576
Alignment:
| Q |
79 |
ttttctaagaaatcaactaagcttcgccaaacacaaattggtccgtta--gtcggacccttacttagtttaattctcagctggctcaactgaatcatcag |
176 |
Q |
| |
|
|||| ||||||| |||||||| ||| |||||||| ||| | ||||| ||||| ||||| |||||||| | ||||| |||||| ||||||||||| |
|
|
| T |
16579794 |
ttttttaagaaagcaactaagtttccccaaacacgaatcaatacgttatagtcggcccctttcttagtttcactctcatatggctcctctgaatcatcaa |
16579695 |
T |
|
| Q |
177 |
cctttatgtttggttgctgcgctagaatatcgagaatgacaaaaatattctgcacacattttttccacacatatataagcacatgcccaccaacgaggct |
276 |
Q |
| |
|
| ||||||||||| | |||| | ||||||||||||||||| || ||||| |||||||||||||||||||||| |||| ||| ||||||||||| |||||| |
|
|
| T |
16579694 |
catttatgtttggatactgcacaagaatatcgagaatgaccaacatattatgcacacattttttccacacatttataggcatatgcccaccaatgaggct |
16579595 |
T |
|
| Q |
277 |
taaattaacatcatactga |
295 |
Q |
| |
|
| ||||||||||| ||||| |
|
|
| T |
16579594 |
tgaattaacatcaaactga |
16579576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 79 - 295
Target Start/End: Original strand, 16615586 - 16615804
Alignment:
| Q |
79 |
ttttctaagaaatcaactaagcttcgccaaacacaaattggtccgtta--gtcggacccttacttagtttaattctcagctggctcaactgaatcatcag |
176 |
Q |
| |
|
|||| ||||||| |||||||| ||| |||||||| ||| | ||||| ||||| ||||| |||||||| | ||||| |||||| ||||||||||| |
|
|
| T |
16615586 |
ttttttaagaaagcaactaagtttccccaaacacgaatcaatacgttatagtcggcccctttcttagtttcactctcatatggctcctctgaatcatcaa |
16615685 |
T |
|
| Q |
177 |
cctttatgtttggttgctgcgctagaatatcgagaatgacaaaaatattctgcacacattttttccacacatatataagcacatgcccaccaacgaggct |
276 |
Q |
| |
|
| ||||||||||| | |||| | ||||||||||||||||| || ||||| |||||||||||||||||||||| |||| ||| ||||||||||| |||||| |
|
|
| T |
16615686 |
catttatgtttggatactgcacaagaatatcgagaatgaccaacatattatgcacacattttttccacacatttataggcatatgcccaccaatgaggct |
16615785 |
T |
|
| Q |
277 |
taaattaacatcatactga |
295 |
Q |
| |
|
| ||||||||||| ||||| |
|
|
| T |
16615786 |
tgaattaacatcaaactga |
16615804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 320 - 500
Target Start/End: Original strand, 16615805 - 16615990
Alignment:
| Q |
320 |
gcagaaaccacactaaaaagaatttgcagcttttaggcaggtattat-agccaattttgataggtaggtaac---tgttcaacttgttcaaaccttccag |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||| || | ||||||||||||| ||||||||| || |||||||||||||||||| ||| |
|
|
| T |
16615805 |
gcagaaaccacactaaaaagaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcag |
16615904 |
T |
|
| Q |
416 |
ttttattccttcccctagccgccacaagatctttgaacttcttgttaaa-agtgtcccatgtgatggatggatcagcatcgataat |
500 |
Q |
| |
|
|||| |||||||||||| | |||||||| |||||||||||||||||| | | ||||||||||| ||||||| |||||||||||| |
|
|
| T |
16615905 |
ttttcttccttcccctaactgccacaagccatttgaacttcttgttaaacaatttcccatgtgatcgatggatgagcatcgataat |
16615990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 320 - 500
Target Start/End: Complemental strand, 16872894 - 16872709
Alignment:
| Q |
320 |
gcagaaaccacactaaaaagaatttgcagcttttaggcaggtattat-agccaattttgataggtaggtaac---tgttcaacttgttcaaaccttccag |
415 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || |||||| || | ||||||||||||| ||||||||| || |||||||||||||||||| || |
|
|
| T |
16872894 |
gcagaaaccacactaaaaagaatttgaagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcaa |
16872795 |
T |
|
| Q |
416 |
ttttattccttcccctagccgccacaagatctttgaacttcttgttaaa-agtgtcccatgtgatggatggatcagcatcgataat |
500 |
Q |
| |
|
|||| |||||||||||| | |||||||| |||||||||||||||||| | | ||||||||||| |||||||||||||||||||| |
|
|
| T |
16872794 |
ttttcttccttcccctaactgccacaagccatttgaacttcttgttaaacaatttcccatgtgatcgatggatcagcatcgataat |
16872709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 129; Significance: 2e-66; HSPs: 3)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 63 - 277
Target Start/End: Original strand, 12471 - 12689
Alignment:
| Q |
63 |
aaactcagcatttat-gttttctaagaaatcaactaagcttcgccaaacacaaattggtccgtta---gtcggacccttacttagtttaattctcagctg |
158 |
Q |
| |
|
||||||||||||||| |||||||||||||| | |||||||| |||||||| ||||||| ||||| ||||||||||| |||||||||||||||| | | |
|
|
| T |
12471 |
aaactcagcatttattgttttctaagaaattatttaagcttccccaaacacgaattggtacgttattagtcggaccctttcttagtttaattctcatcag |
12570 |
T |
|
| Q |
159 |
gctcaactgaatcatcagcctttatgtttggttgctgcgctagaatatcgagaatgacaaaaatattctgcacacattttttccacacatatataagcac |
258 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
12571 |
gctcaactgaatcataagcctttatgtttggttgctgcgctagaatatctagaattaccaaaatattctgctcacattttttccacacatttataagcat |
12670 |
T |
|
| Q |
259 |
atgcccaccaacgaggctt |
277 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
12671 |
atgcccaccaatgaggctt |
12689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 295
Target Start/End: Original strand, 14948 - 15077
Alignment:
| Q |
166 |
tgaatcatcagcctttatgtttggttgctgcgctagaatatcgagaatgacaaaaatattctgcacacattttttccacacatatataagcacatgccca |
265 |
Q |
| |
|
|||||||||| | |||||||||| |||||| ||||||| ||||||||||| | |||||||||| |||||||||||| || |||| ||| ||||||| |
|
|
| T |
14948 |
tgaatcatcaacagttatgtttggatgctgccgaagaatattgagaatgacaatcaaattctgcacaaattttttccacatatttatatgcatatgccca |
15047 |
T |
|
| Q |
266 |
ccaacgaggcttaaattaacatcatactga |
295 |
Q |
| |
|
|||| ||||||| |||||||||| ||||| |
|
|
| T |
15048 |
ccaatgaggcttggattaacatcaaactga |
15077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 14794 - 14838
Alignment:
| Q |
6 |
caagaacaacaaacataggttcatcctggagcctctcaacatatt |
50 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14794 |
caagaataacaaacataggttcatcttggagcctctcaacatatt |
14838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 324 - 514
Target Start/End: Complemental strand, 32791040 - 32790849
Alignment:
| Q |
324 |
aaaccacactaaaaagaatttgcagcttttaggcaggtattatagccaattttgataggtaggtaa-ctgttcaacttgttcaaaccttccagttttatt |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| || |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32791040 |
aaaccacactaaaaagaatttgcagcttttgtgcaggtgttttagccaattttgttaggtaggtaagctgttcaacttgttcaaaccttccagttttatt |
32790941 |
T |
|
| Q |
423 |
ccttcccctagccgccacaagatctttgaacttcttgttaaaagtgtcccatgtgatggatggatcagcatcgataatcttatcatggctct |
514 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| | ||| ||||||||||| |||||||||||||| ||||| | |||||||||| |
|
|
| T |
32790940 |
ccttcccctagctgccacaagctctttgaacttcttgttcacagtatcccatgtgatcgatggatcagcatcaataatatcgtcatggctct |
32790849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 63 - 295
Target Start/End: Complemental strand, 32791279 - 32791045
Alignment:
| Q |
63 |
aaactcagcatttatgttttctaagaaatcaactaagcttcgccaaacacaaattggtccgtta--gtcggacccttacttagtttaattctcagctggc |
160 |
Q |
| |
|
||||||||||| ||| ||||||| |||| |||||||| ||| | |||||| ||| ||||||||| || || ||||| |||| ||| |||||| || || |
|
|
| T |
32791279 |
aaactcagcatatattttttctatgaaagcaactaagtttcccgaaacacgaatcggtccgttatagttggcccctttcttaatttcattctcttcttgc |
32791180 |
T |
|
| Q |
161 |
tcaactgaatcatcagcctttatgtttggttgctgcgctagaatatcgagaatgacaaaaatattctgcacacattttttccacacatatataagcacat |
260 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| | |||||||| |||||||| || |||||||||||||||||||||||||||| |||| ||| || |
|
|
| T |
32791179 |
tcaactgaatcatcaacctttatgtttgggtgctgcaccagaatatcaagaatgaccaacatattctgcacacattttttccacacatttataggcaaat |
32791080 |
T |
|
| Q |
261 |
gcccaccaacgaggcttaaattaacatcatactga |
295 |
Q |
| |
|
|||| |||| ||||||| |||||||||| ||||| |
|
|
| T |
32791079 |
gccccccaatgaggcttggattaacatcaaactga |
32791045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 320 - 479
Target Start/End: Original strand, 236589 - 236749
Alignment:
| Q |
320 |
gcagaaaccacactaaaaagaatttgcagcttttaggcaggtattatagccaattttgataggtaggtaa-ctgttcaacttgttcaaaccttccagttt |
418 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | |||||| || |||| | ||||| |||| | |||| ||| ||||| |||||||||||||||||| |
|
|
| T |
236589 |
gcagaaaccacactgaaaagaatttgcagcttctgagcaggtgttttagcaacttttgttaggaaagtaagctgctcaacctgttcaaaccttccagttc |
236688 |
T |
|
| Q |
419 |
tattccttcccctagccgccacaagatctttgaacttcttgttaaaagtgtcccatgtgat |
479 |
Q |
| |
|
||||| ||||| || ||| || ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
236689 |
ccttcctgcccctggcttccagaatctctttgaacttcttgttaacagtgtcccatgtgat |
236749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 63 - 266
Target Start/End: Original strand, 236357 - 236562
Alignment:
| Q |
63 |
aaactcagcatttatgttttctaagaaatcaactaagcttcgccaaacacaaattggtccgt--tagtcggacccttacttagtttaattctcagctggc |
160 |
Q |
| |
|
|||||| |||| ||| |||||||||||| |||||||| | | ||| ||| ||| ||||||| ||||| ||||| |||||||| |||||| || || |
|
|
| T |
236357 |
aaactcggcatctattttttctaagaaagcaactaagttaccccagacatgaatgggtccgtcatagtcatcccctttcttagtttcattctcgtctagc |
236456 |
T |
|
| Q |
161 |
tcaactgaatcatcagcctttatgtttggttgctgcgctagaatatcgagaatgacaaaaatattctgcacacattttttccacacatatataagcacat |
260 |
Q |
| |
|
|| || ||||||||| ||||||||||||| |||||| | ||||| ||||| ||||| | || ||||||||||| ||||||||||||| ||| ||| || |
|
|
| T |
236457 |
tccacagaatcatcaacctttatgtttgggtgctgcacgagaatgtcgaggatgaccagcatgttctgcacacactttttccacacatttatgggcatat |
236556 |
T |
|
| Q |
261 |
gcccac |
266 |
Q |
| |
|
|||||| |
|
|
| T |
236557 |
gcccac |
236562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 32791361 - 32791317
Alignment:
| Q |
6 |
caagaacaacaaacataggttcatcctggagcctctcaacatatt |
50 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32791361 |
caagaacaacaaacttaggttcatcctggagcctctcaacatatt |
32791317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 320 - 479
Target Start/End: Complemental strand, 7389216 - 7389056
Alignment:
| Q |
320 |
gcagaaaccacactaaaaagaatttgcagcttttaggcaggtattatagccaattttgataggtaggtaa-ctgttcaacttgttcaaaccttccagttt |
418 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | |||||| || |||| | ||||| |||| |||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
7389216 |
gcagaaaccacactgaaaagaatttgcagcttctgagcaggtgttttagcaacttttgttaggaaggtaagctgctcaacctgttcaaaccttccagttc |
7389117 |
T |
|
| Q |
419 |
tattccttcccctagccgccacaagatctttgaacttcttgttaaaagtgtcccatgtgat |
479 |
Q |
| |
|
||||| ||||| || ||| || ||||||||||||||||||| |||||||||||||| |
|
|
| T |
7389116 |
ccttcctgcccctggcttccagaatctctttgaacttcttgttaaccgtgtcccatgtgat |
7389056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 63 - 247
Target Start/End: Complemental strand, 7389448 - 7389262
Alignment:
| Q |
63 |
aaactcagcatttatgttttctaagaaatcaactaagcttcgccaaacacaaattggtccgtta--gtcggacccttacttagtttaattctcagctggc |
160 |
Q |
| |
|
|||||| |||| ||| |||||||||||| |||||||| | | ||| ||| ||| ||||||||| ||| ||||| |||||||| |||||| || || |
|
|
| T |
7389448 |
aaactcggcatctattttttctaagaaagcaactaagttgccccagacattaatgggtccgttatagtcatcccctttcttagtttcattctcgtctagc |
7389349 |
T |
|
| Q |
161 |
tcaactgaatcatcagcctttatgtttggttgctgcgctagaatatcgagaatgacaaaaatattctgcacacattttttccacaca |
247 |
Q |
| |
|
|| || ||||||||| ||||||||||||| |||||| | ||||| ||||||||||| | || ||||||||||| |||||||||||| |
|
|
| T |
7389348 |
tccacagaatcatcaacctttatgtttgggtgctgcacgagaatgtcgagaatgaccagcatgttctgcacacactttttccacaca |
7389262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 320 - 479
Target Start/End: Original strand, 48301015 - 48301175
Alignment:
| Q |
320 |
gcagaaaccacactaaaaagaatttgcagcttttaggcaggtattatagccaattttgataggtaggt-aactgttcaacttgttcaaaccttccagttt |
418 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | |||||| || |||| | ||||| |||| |||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
48301015 |
gcagaaaccacactgaaaagaatttgcagcttctgtgcaggtgttttagcaacttttgttaggaaggtaaactgctcaacctgttcaaaccttccagttc |
48301114 |
T |
|
| Q |
419 |
tattccttcccctagccgccacaagatctttgaacttcttgttaaaagtgtcccatgtgat |
479 |
Q |
| |
|
||||| ||||| || ||| || ||||||||||| ||||||| ||| ||||||||||| |
|
|
| T |
48301115 |
ccttcctgcccctggcttccagaatctctttgaacttgttgttaacagtatcccatgtgat |
48301175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 266
Target Start/End: Original strand, 48300790 - 48300988
Alignment:
| Q |
70 |
gcatttatgttttctaagaaatcaactaagcttcgccaaacacaaattggtccgt--tagtcggacccttacttagtttaattctcagctggctcaactg |
167 |
Q |
| |
|
|||| ||| |||||||||||| |||||||| | | ||| ||| ||| ||||||| ||||| ||||| ||||| || ||||||| || | || || | |
|
|
| T |
48300790 |
gcatctattttttctaagaaagcaactaagttgccccagacatgaatgggtccgtcatagtcatcccctttcttagattcattctcatctagttccacag |
48300889 |
T |
|
| Q |
168 |
aatcatcagcctttatgtttggttgctgcgctagaatatcgagaatgacaaaaatattctgcacacattttttccacacatatataagcacatgcccac |
266 |
Q |
| |
|
|||||||| ||||||||||||| |||||| | |||||||| |||||||| | ||||||||||| || ||||||||||||| ||| ||| |||||||| |
|
|
| T |
48300890 |
aatcatcaacctttatgtttgggtgctgcacgagaatatcaagaatgaccagcatattctgcacgcactttttccacacatttatgggcatatgcccac |
48300988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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