View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4705-Insertion-5 (Length: 191)
Name: NF4705-Insertion-5
Description: NF4705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4705-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 17606723 - 17606550
Alignment:
| Q |
8 |
agatgtattaaaagtaaaattgaaatgggagttcagggaattacattaccacaagtcatgttactggtttcaaacatagaatagaaatcaaaccaaaact |
107 |
Q |
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| T |
17606723 |
agatgtattaaaagtaaaattgaaatgggagttcagggaattacattaccacaagtcatgttactggtttcaaacatagaatagaaatcaaacctaaact |
17606624 |
T |
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| Q |
108 |
aactatcacgaacttataattaaacttagaaatgtaatattagtatagaatataagcaaatttaattgatatct |
181 |
Q |
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| T |
17606623 |
aactctcacgaacttataactaaacatagaaatgtaatattagtatagaatataagcaaatttaattgatatct |
17606550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 17633201 - 17633034
Alignment:
| Q |
15 |
ttaaaagtaaaattgaaatgggagttcagggaattacattaccacaagtcatgttactggtttcaaacatagaatagaaatcaaaccaaaactaactatc |
114 |
Q |
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| T |
17633201 |
ttaaaagtaaaattgagaggggagctcagggaattacattaccaaaggccatgttactggtttcaaacaaagaatagaaatctaaccaaaacaaatcttc |
17633102 |
T |
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| Q |
115 |
acgaacttataattaaacttagaaatgtaatattagtatagaatataagcaaatttaattgatatctc |
182 |
Q |
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| T |
17633101 |
aaaaacttataactaaactcagaaatttaatactagtataaaaaataagcaaatttaatcgatatctc |
17633034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 16474353 - 16474489
Alignment:
| Q |
46 |
aattacattaccacaagtcatgttactggtttcaaacatagaatagaaatcaaaccaaaactaactatcacgaacttataattaaacttagaaatgtaat |
145 |
Q |
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| T |
16474353 |
aattacattaccacaagttgagttattggttttaaacaaagaatagaaatcaaaccaaaaaaaattgtcacaaacttataactaaactcacaaatgtaat |
16474452 |
T |
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| Q |
146 |
attagtatagaatataagcaaatttaattgatatctc |
182 |
Q |
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| T |
16474453 |
actagaatagaaaataagaaaatttaattgatatctc |
16474489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 17662928 - 17663096
Alignment:
| Q |
12 |
gtattaaaagtaaaattgaaatgggagttcagggaattacattaccacaagtcatgttactggtttcaaacatagaatagaaatcaaaccaaaactaact |
111 |
Q |
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| T |
17662928 |
gtattaaaagtaaaactaagatgggagttcaaagaattacattatcacaagtcatgttacttgtttgacacatagaacagaaatcaaattaaaactaaat |
17663027 |
T |
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| Q |
112 |
atcacgaacttataattaaacttagaaatgtaatattagtatagaatataagcaaatttaattgatatc |
180 |
Q |
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| T |
17663028 |
ttgacaaacttctagctgaactcagtatggtaatattgatataacaaataagcaaatttaattgatatc |
17663096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 17646786 - 17646688
Alignment:
| Q |
13 |
tattaaaagtaaaattgaaatgggagttcagggaattacattac-cacaagtcatgtt--actggtttcaaacatagaatagaaatcaaaccaaaacta |
108 |
Q |
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| T |
17646786 |
tattaaaaataaaatcgagaggagagttcagggaattatatttgtcacaagtcatattttagtggtttcaaacatagaatataaatcaaaccaaaacta |
17646688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 17646680 - 17646635
Alignment:
| Q |
137 |
aaatgtaatattagtatagaatataagcaaatttaattgatatctc |
182 |
Q |
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| T |
17646680 |
aaatgtaatattgatatacaaaataagcaaatttaattgatatctc |
17646635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 17674514 - 17674610
Alignment:
| Q |
12 |
gtattaaaagtaaaattgaaatgggagttcagggaattacattaccacaagtcatgttactggtttcaaacatagaatag-aaatcaaaccaaaactaa |
109 |
Q |
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| T |
17674514 |
gtattaaaagtaaaagtaagacgggagttcaaagcattacattatcacaaatcatgttacttgttt--gacacagaatagaaaatcaaatcaaaactaa |
17674610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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