View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4705_high_1 (Length: 701)
Name: NF4705_high_1
Description: NF4705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4705_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 31 - 466
Target Start/End: Complemental strand, 26657623 - 26657188
Alignment:
| Q |
31 |
aagtcactgtcagaaattgatttgacctcaaatttggatgtcgaacttgcatttcaccattgacctgcagaaggttttgtctttcgtataactttcgcat |
130 |
Q |
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| T |
26657623 |
aagtcactgtcagaaattgatttgacctcaaatttggatgtcgaacttgcatttcactattgacctgcagaaggttttgtctttcgtataactttcgcat |
26657524 |
T |
|
| Q |
131 |
attctgtctcttgattccatttctgaaggaagtgcttgctagacatcgtttttctttgtagggtaagtccaacttttgccgctctcttgttttcctatct |
230 |
Q |
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| T |
26657523 |
attctgtctcttgattccatttctgaaggaagtgcttgctagacatcgtttttctttgtagggtaagtccaacttttgccgctctcttgttttcctatct |
26657424 |
T |
|
| Q |
231 |
aggtactcttttgcttgcacctgaactgatataaagaaacatcatttgtagtgacgcggtgaatatttacaatgcacaattcaattattgaaagaatatg |
330 |
Q |
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| T |
26657423 |
aggtactctgttgcttgcacctgaactgatataaagaaacatcatttgtagtgacgcggtgaatatttacaatgcacaattcaattatcgaaagaatatg |
26657324 |
T |
|
| Q |
331 |
aaaacaaccttaaaggtaaaacataaatgtccataaaattaacccttgaggaggaaaatatgataattattacaatatgttcccataatacccaaccaaa |
430 |
Q |
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| T |
26657323 |
aaaacaaccttaaaggtaaaatataaatgtccataaaattaacccttgaggaggaaaatatgacaattattacaatatgttcccataatacccaaccaaa |
26657224 |
T |
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| Q |
431 |
gtttatttttcatataacacggcctttcacacgcac |
466 |
Q |
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| T |
26657223 |
gtttattattcatataacatggcctttcacacgcac |
26657188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 48 - 425
Target Start/End: Complemental strand, 26643973 - 26643594
Alignment:
| Q |
48 |
tgatttgacctcaaatttggatgtcgaacttgcatttcaccattgacctgcagaaggttttgtctttcgtataactttcgcatattctgtctcttgattc |
147 |
Q |
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| T |
26643973 |
tgattttacctcaaattcggatgctgtccttgcatttcagaattagcacgcagaagggtttgtcgtttatataactttcgcatattctgtctcttaattc |
26643874 |
T |
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| Q |
148 |
catttctgaaggaagtgcttgctagacatcgtttttctttgtagggtaagtccaacttttgccgctctcttgttttcctatctaggtactcttttgcttg |
247 |
Q |
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| T |
26643873 |
catttctgaatgaagtgcttgctagacatcgtttttctttgtagggtaagtccaacttttgctgctctcttgttttcctctctaggtactctgttgcttg |
26643774 |
T |
|
| Q |
248 |
cacctgaactgatataaagaaacatcatttgtagtgacgcggtgaatatttacaatgcac-aattcaattattgaaagaatatgaaa-acaaccttaaag |
345 |
Q |
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| T |
26643773 |
cacttgaactgatgtatcaaaacatcatttgtagttaagcaatgaatatttataaagcacaaacccaattcttgatagaaaatgaaagtcaaccttaaag |
26643674 |
T |
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| Q |
346 |
gtaaaacataaatgtccataaaattaacccttgaggaggaaaatatgataattattacaatatgttcccataatacccaa |
425 |
Q |
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| T |
26643673 |
ataaaatgtaaatgtccataaagttagtcactaaggaggaaaatatgacaattagtacaatatctccgcataatacccaa |
26643594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 528 - 674
Target Start/End: Complemental strand, 26657174 - 26657024
Alignment:
| Q |
528 |
tagagcagtaaataacatccgaggaatggaaaatgatatgtcaagaaaaagattaatggaacagaaacagcaaaagaacaaggagatagag----agaac |
623 |
Q |
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| T |
26657174 |
tagagcagtaaataacatccgaggaatggaaaatgatatgtcaagaaaaagattaatagaacagaaacagcaaaagaacaaggagatagagagaaagaac |
26657075 |
T |
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| Q |
624 |
caataatgtaactaacaaggctttccagcatattaaccttcaataaatgga |
674 |
Q |
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| T |
26657074 |
caataatgtaactaacaaggctttccagcatattaaccttcaataaatgga |
26657024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 7634110 - 7634061
Alignment:
| Q |
213 |
tctcttgttttcctatctaggtactcttttgcttgcacctgaactgatat |
262 |
Q |
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| T |
7634110 |
tctcttgtttttctttctaggtactatgttgcttgcacttgaactgatat |
7634061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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