View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4705_high_12 (Length: 331)

Name: NF4705_high_12
Description: NF4705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4705_high_12
NF4705_high_12
[»] chr1 (38 HSPs)
chr1 (29-331)||(15030921-15031228)
chr1 (29-331)||(15009823-15010130)
chr1 (120-331)||(15023959-15024175)
chr1 (109-331)||(15031145-15031372)
chr1 (120-331)||(15031300-15031516)
chr1 (31-157)||(15010041-15010167)
chr1 (114-331)||(15024097-15024319)
chr1 (114-331)||(15031438-15031660)
chr1 (109-331)||(14533655-14533882)
chr1 (201-308)||(15001181-15001288)
chr1 (204-331)||(15036095-15036222)
chr1 (29-97)||(15001220-15001288)
chr1 (109-169)||(15001228-15001288)
chr1 (125-331)||(15023820-15024031)
chr1 (31-126)||(15031139-15031234)
chr1 (28-125)||(15024083-15024180)
chr1 (28-125)||(15031424-15031521)
chr1 (239-325)||(14533805-14533891)
chr1 (29-126)||(15023940-15024037)
chr1 (29-126)||(15031281-15031378)
chr1 (24-100)||(14533819-14533895)
chr1 (29-100)||(14533675-14533746)
chr1 (109-184)||(15036139-15036214)
chr1 (28-126)||(15036130-15036228)
chr1 (31-127)||(15024230-15024326)
chr1 (109-157)||(15024236-15024284)
chr1 (31-127)||(15031571-15031667)
chr1 (109-157)||(15031577-15031625)
chr1 (239-325)||(15016225-15016311)
chr1 (259-309)||(15039879-15039929)
chr1 (201-266)||(14523455-14523520)
chr1 (108-172)||(15016233-15016297)
chr1 (248-331)||(15010119-15010202)
chr1 (120-170)||(15039879-15039929)
chr1 (270-331)||(15016112-15016173)
chr1 (59-100)||(15016112-15016153)
chr1 (131-172)||(15016112-15016153)
chr1 (28-100)||(15016225-15016297)
[»] scaffold0400 (9 HSPs)
scaffold0400 (235-296)||(11741-11802)
scaffold0400 (235-302)||(11597-11664)
scaffold0400 (235-296)||(11885-11946)
scaffold0400 (28-91)||(11601-11664)
scaffold0400 (28-91)||(11745-11808)
scaffold0400 (109-163)||(11610-11664)
scaffold0400 (109-163)||(11754-11808)
scaffold0400 (28-91)||(11889-11952)
scaffold0400 (109-163)||(11898-11952)
[»] scaffold0365 (9 HSPs)
scaffold0365 (235-296)||(12384-12445)
scaffold0365 (235-302)||(12240-12307)
scaffold0365 (235-296)||(12528-12589)
scaffold0365 (28-91)||(12244-12307)
scaffold0365 (28-91)||(12388-12451)
scaffold0365 (109-163)||(12253-12307)
scaffold0365 (109-163)||(12397-12451)
scaffold0365 (28-91)||(12532-12595)
scaffold0365 (109-163)||(12541-12595)


Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 29 - 331
Target Start/End: Original strand, 15030921 - 15031228
Alignment:
Q  29 tcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatttacctttcaaggaatcatctcactggacaaattccac 128  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||| ||||||||    
T  15030921 tcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattattgacctttcaagaaatcatctctctggaccaattccac 15031020  T
Q  129 cttccataggtaacttgatcaatttgga-tactatttacctttcaataaatcatctc-caggatcaa----ctcgaccatcggaaatttaacgaaagcaa 222  Q
    ||||||||||||| ||||| |||||||| |||| ||| |||||||  |||| ||||| | ||| |||     || || || |||||||| || |||   |    
T  15031021 cttccataggtaatttgattaatttggattact-tttccctttcacaaaataatctctctggaccaattccttccactattggaaatttgacaaaactca 15031119  T
Q  223 gtagattatcatttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattatttacctttcaataaataatct 322  Q
    ||| ||||||  |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||  |||||||||    
T  15031120 gtacattatctctttatttaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatantattgacctttcacaaaataatct 15031219  T
Q  323 ctcaggacc 331  Q
    ||| |||||    
T  15031220 ctctggacc 15031228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 29 - 331
Target Start/End: Original strand, 15009823 - 15010130
Alignment:
Q  29 tcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatttacctttcaaggaatcatctcactggacaaattccac 128  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||| ||||||||    
T  15009823 tcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattattgacctttcaagaaatcatctctctggaccaattccac 15009922  T
Q  129 cttccataggtaacttgatcaatttgga-tactatttacctttcaataaatcatctc-caggatcaa----ctcgaccatcggaaatttaacgaaagcaa 222  Q
    ||||||||||||| ||||| |||||||| |||| ||| |||||||  |||| ||||| | ||| |||     || || || |||||||| || |||   |    
T  15009923 cttccataggtaatttgattaatttggattact-tttccctttcacaaaataatctctctggaccaattccttccactattggaaatttgacaaaactca 15010021  T
Q  223 gtagattatcatttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattatttacctttcaataaataatct 322  Q
    ||| ||||||  |||  | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| |||| ||||    
T  15010022 gtacattatctctttatttaaatgctctcactggacaaattccaccttccgtaggtaacttgatcaatttggataatatttccctttcaagaaatcatct 15010121  T
Q  323 ctcaggacc 331  Q
    ||| |||||    
T  15010122 ctctggacc 15010130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 120 - 331
Target Start/End: Original strand, 15023959 - 15024175
Alignment:
Q  120 aaattccaccttccataggtaacttgatcaatttggatactatttacctttcaataaatcatctc-caggatcaactcg----accatcggaaatttaac 214  Q
    ||||||||||||||||||||||||||||||||||||||  |||| |||| |||| |||||||||| | ||| ||| ||     |||||||||||||||||    
T  15023959 aaattccaccttccataggtaacttgatcaatttggatcttattcacctatcaagaaatcatctctctggaccaattccttccaccatcggaaatttaac 15024058  T
Q  215 gaaagcaagtagattatcatttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattatttacctttcaata 314  Q
     |||    ||| ||||||  ||||||||||||||||  ||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||||| |    
T  15024059 aaaactcggtacattatctcttttctcaaatgctcttgctggacaaattccaccttccataggaaatttgataaatttggatactatttacctttcaaaa 15024158  T
Q  315 aataatctctcaggacc 331  Q
    ||| ||||||| |||||    
T  15024159 aatcatctctctggacc 15024175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 109 - 331
Target Start/End: Original strand, 15031145 - 15031372
Alignment:
Q  109 tctcactggacaaattccaccttccataggtaacttgatcaatttggatactatttacctttcaataaatcatctc-caggatcaactcg----accatc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||  |||| ||||| | ||| ||| ||     || |||    
T  15031145 tctcactggacaaattccaccttccataggtaacttgatcaatttggatantattgacctttcacaaaataatctctctggaccaattcctttcactatc 15031244  T
Q  204 ggaaatttaacgaaagcaagtagattatcatttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattattt 303  Q
    ||||||||||| |||  ||||  ||| |  ||||  |||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |||||     
T  15031245 ggaaatttaaccaaactaagtgaattgtatttttattcaaatgctctctccggagaaattccaccttccataggtaacttgatcaatttggatcttattc 15031344  T
Q  304 acctttcaataaataatctctcaggacc 331  Q
    |||| |||| |||| ||||||| |||||    
T  15031345 acctatcaagaaatcatctctctggacc 15031372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 120 - 331
Target Start/End: Original strand, 15031300 - 15031516
Alignment:
Q  120 aaattccaccttccataggtaacttgatcaatttggatactatttacctttcaataaatcatctc-caggatcaactcg----accatcggaaatttaac 214  Q
    ||||||||||||||||||||||||||||||||||||||  |||| |||| |||| |||||||||| | ||| ||| ||     |||||||||||||||||    
T  15031300 aaattccaccttccataggtaacttgatcaatttggatcttattcacctatcaagaaatcatctctctggaccaattccttccaccatcggaaatttaac 15031399  T
Q  215 gaaagcaagtagattatcatttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattatttacctttcaata 314  Q
     |||    ||| ||||||  ||||||||||||||||  ||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||||| |    
T  15031400 aaaactcggtacattatctcttttctcaaatgctcttgctggacaaattccaccttccataggaaatttgataaatttggatactatttacctttcaaaa 15031499  T
Q  315 aataatctctcaggacc 331  Q
    ||| ||||||| |||||    
T  15031500 aatcatctctctggacc 15031516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 15010041 - 15010167
Alignment:
Q  31 aaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatttacctttcaaggaatcatctcactggacaaattccacct 130  Q
    |||||||||||||||||||||||| || ||| |||||||||||||||||||||||| ||||| ||||||||| ||||||||| |||||| ||||||||||    
T  15010041 aaatgctctcactggacaaattccaccttccgtaggtaacttgatcaatttggataatatttccctttcaagaaatcatctctctggaccaattccacct 15010140  T
Q  131 tccataggtaacttgatcaatttggat 157  Q
    ||||||||||| ||||  |||||||||    
T  15010141 tccataggtaatttgactaatttggat 15010167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 114 - 331
Target Start/End: Original strand, 15024097 - 15024319
Alignment:
Q  114 ctggacaaattccaccttccataggtaacttgatcaatttggatactatttacctttcaataaatcatctc-caggatcaa----ctcgaccatcggaaa 208  Q
    ||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||| | ||| |||     || | |||||||||    
T  15024097 ctggacaaattccaccttccataggaaatttgataaatttggatactatttacctttcaaaaaatcatctctctggaccaattctttccatcatcggaaa 15024196  T
Q  209 tttaacgaaagcaagtagattatcatttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattatttacctt 308  Q
    |||||| |||   |||| |||| |  ||  |  |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||   |||| ||||    
T  15024197 tttaacaaaattgagtaaattaactcttggcgtaaatgctctcaccggacaaattccaccttccataggtaatttgattaatttggattacatttccctt 15024296  T
Q  309 tcaataaataatctctcaggacc 331  Q
    |||  |||||||||||| |||||    
T  15024297 tcacaaaataatctctctggacc 15024319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 114 - 331
Target Start/End: Original strand, 15031438 - 15031660
Alignment:
Q  114 ctggacaaattccaccttccataggtaacttgatcaatttggatactatttacctttcaataaatcatctc-caggatcaa----ctcgaccatcggaaa 208  Q
    ||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||| | ||| |||     || | |||||||||    
T  15031438 ctggacaaattccaccttccataggaaatttgataaatttggatactatttacctttcaaaaaatcatctctctggaccaattctttccatcatcggaaa 15031537  T
Q  209 tttaacgaaagcaagtagattatcatttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattatttacctt 308  Q
    |||||| |||   |||| |||| |  ||  |  |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||   |||| ||||    
T  15031538 tttaacaaaattgagtaaattaactcttggcgtaaatgctctcaccggacaaattccaccttccataggtaatttgattaatttggattacatttccctt 15031637  T
Q  309 tcaataaataatctctcaggacc 331  Q
    |||  |||||||||||| |||||    
T  15031638 tcacaaaataatctctctggacc 15031660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 109 - 331
Target Start/End: Complemental strand, 14533882 - 14533655
Alignment:
Q  109 tctcactggacaaattccaccttccataggtaacttgatcaatttggatactatttacctttcaataaatcatctc-caggatcaactcg----accatc 203  Q
    |||||| ||||||||||||||||||||||||||| || | ||||||||||||||| ||||||||  |||| | ||| |  || ||| ||     ||  |     
T  14533882 tctcaccggacaaattccaccttccataggtaacctggttaatttggatactattgacctttcagaaaataaactctctagaccaattccttccactgtt 14533783  T
Q  204 ggaaatttaacgaaagcaagtagattatcatttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattattt 303  Q
    |||||||||||||||| ||||| ||||||  ||   ||||||||||||||||||||| |||||||||||||||||||| || | |||||||||| |||||    
T  14533782 ggaaatttaacgaaagtaagtatattatctcttcattcaaatgctctcactggacaacttccaccttccataggtaacatggttaatttggatactattt 14533683  T
Q  304 acctttcaataaataatctctcaggacc 331  Q
    ||||||||  |||||| ||||| |||||    
T  14533682 acctttcagaaaataaactctctggacc 14533655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 201 - 308
Target Start/End: Original strand, 15001181 - 15001288
Alignment:
Q  201 atcggaaatttaacgaaagcaagtagattatcatttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatatta 300  Q
    ||||||||||||||||||  ||||  ||| |  ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15001181 atcggaaatttaacgaaactaagtgaattgtatttttattcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatacta 15001280  T
Q  301 tttacctt 308  Q
    ||||||||    
T  15001281 tttacctt 15001288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 204 - 331
Target Start/End: Original strand, 15036095 - 15036222
Alignment:
Q  204 ggaaatttaacgaaagcaagtagattatcatttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattattt 303  Q
    ||||||||||| ||||  |||  ||||| | ||| ||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||  ||||     
T  15036095 ggaaatttaaccaaagtgagtgaattattaatttactcaaatgctctcactggaaaaattccaccttccataggtaatttgattaatttggattctattc 15036194  T
Q  304 acctttcaataaataatctctcaggacc 331  Q
    |||||||| ||||||||||||| |||||    
T  15036195 acctttcactaaataatctctctggacc 15036222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 15001220 - 15001288
Alignment:
Q  29 tcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatttacctt 97  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  15001220 tcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatactatttacctt 15001288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 15001228 - 15001288
Alignment:
Q  109 tctcactggacaaattccaccttccataggtaacttgatcaatttggatactatttacctt 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15001228 tctcactggacaaattccaccttccataggtaacttgatcaatttggatactatttacctt 15001288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 125 - 331
Target Start/End: Original strand, 15023820 - 15024031
Alignment:
Q  125 ccaccttccataggtaacttgatcaatttggatactatttacctttcaataaatcatctc-caggatcaactcg----accatcggaaatttaacgaaag 219  Q
    ||||| ||||||||||| ||||| |||||||||| |||| ||||||||  |||| ||||| | ||| ||| ||     || |||||||||||||| |||     
T  15023820 ccaccatccataggtaatttgattaatttggatagtattgacctttcacaaaataatctctctggaccaattcctttcactatcggaaatttaaccaaac 15023919  T
Q  220 caagtagattatcatttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattatttacctttcaataaataa 319  Q
     ||||  ||| |  ||||  |||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||| |    
T  15023920 taagtgaattgtatttttattcaaatgctctctccggagaaattccaccttccataggtaacttgatcaatttggatcttattcacctatcaagaaatca 15024019  T
Q  320 tctctcaggacc 331  Q
    |||||| |||||    
T  15024020 tctctctggacc 15024031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 15031139 - 15031234
Alignment:
Q  31 aaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatttacctttcaaggaatcatctcactggacaaattcc 126  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| ||||||||   ||| ||||| |||||| ||||||    
T  15031139 aaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatantattgacctttcacaaaataatctctctggaccaattcc 15031234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 15024083 - 15024180
Alignment:
Q  28 ctcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatttacctttcaaggaatcatctcactggacaaattc 125  Q
    ||||||||||||  ||||||||||||| || |||||||| || ||||| |||||||||||||||||||||||||  ||||||||| |||||| |||||    
T  15024083 ctcaaatgctcttgctggacaaattccaccttccataggaaatttgataaatttggatactatttacctttcaaaaaatcatctctctggaccaattc 15024180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 15031424 - 15031521
Alignment:
Q  28 ctcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatttacctttcaaggaatcatctcactggacaaattc 125  Q
    ||||||||||||  ||||||||||||| || |||||||| || ||||| |||||||||||||||||||||||||  ||||||||| |||||| |||||    
T  15031424 ctcaaatgctcttgctggacaaattccaccttccataggaaatttgataaatttggatactatttacctttcaaaaaatcatctctctggaccaattc 15031521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 14533891 - 14533805
Alignment:
Q  239 ctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattatttacctttcaataaataatctctc 325  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || | |||||||||| |||| ||||||||  |||||| |||||    
T  14533891 ctcaaatgctctcaccggacaaattccaccttccataggtaacctggttaatttggatactattgacctttcagaaaataaactctc 14533805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 15023940 - 15024037
Alignment:
Q  29 tcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatttacctttcaaggaatcatctcactggacaaattcc 126  Q
    |||||||||||| | ||| ||||||| || |||||||||||||||||||||||||||  |||| |||| ||||| ||||||||| |||||| ||||||    
T  15023940 tcaaatgctctctccggagaaattccaccttccataggtaacttgatcaatttggatcttattcacctatcaagaaatcatctctctggaccaattcc 15024037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 15031281 - 15031378
Alignment:
Q  29 tcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatttacctttcaaggaatcatctcactggacaaattcc 126  Q
    |||||||||||| | ||| ||||||| || |||||||||||||||||||||||||||  |||| |||| ||||| ||||||||| |||||| ||||||    
T  15031281 tcaaatgctctctccggagaaattccaccttccataggtaacttgatcaatttggatcttattcacctatcaagaaatcatctctctggaccaattcc 15031378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 14533895 - 14533819
Alignment:
Q  24 tttcctcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatttacctttca 100  Q
    ||||||||||||||||||| ||||||||||| || |||||||||||| || | ||||||||||||||| ||||||||    
T  14533895 tttcctcaaatgctctcaccggacaaattccaccttccataggtaacctggttaatttggatactattgacctttca 14533819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 14533746 - 14533675
Alignment:
Q  29 tcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatttacctttca 100  Q
    ||||||||||||||||||||| |||| || |||||||||||| || | ||||||||||||||||||||||||    
T  14533746 tcaaatgctctcactggacaacttccaccttccataggtaacatggttaatttggatactatttacctttca 14533675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 15036139 - 15036214
Alignment:
Q  109 tctcactggacaaattccaccttccataggtaacttgatcaatttggatactatttacctttcaataaatcatctc 184  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||||||| ||||| |||||||| ||||| |||||    
T  15036139 tctcactggaaaaattccaccttccataggtaatttgattaatttggattctattcacctttcactaaataatctc 15036214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 15036130 - 15036228
Alignment:
Q  28 ctcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatttacctttcaaggaatcatctcactggacaaattcc 126  Q
    ||||||||||||||||||| ||||||| || ||||||||||| ||||| ||||||||| ||||| ||||||||   ||| ||||| |||||| ||||||    
T  15036130 ctcaaatgctctcactggaaaaattccaccttccataggtaatttgattaatttggattctattcacctttcactaaataatctctctggaccaattcc 15036228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 15024230 - 15024326
Alignment:
Q  31 aaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatttacctttcaaggaatcatctcactggacaaattcca 127  Q
    |||||||||||| ||||||||||| || ||||||||||| ||||| |||||||||   |||| |||||||   ||| ||||| |||||| |||||||    
T  15024230 aaatgctctcaccggacaaattccaccttccataggtaatttgattaatttggattacatttccctttcacaaaataatctctctggaccaattcca 15024326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 15024236 - 15024284
Alignment:
Q  109 tctcactggacaaattccaccttccataggtaacttgatcaatttggat 157  Q
    |||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  15024236 tctcaccggacaaattccaccttccataggtaatttgattaatttggat 15024284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 15031571 - 15031667
Alignment:
Q  31 aaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatttacctttcaaggaatcatctcactggacaaattcca 127  Q
    |||||||||||| ||||||||||| || ||||||||||| ||||| |||||||||   |||| |||||||   ||| ||||| |||||| |||||||    
T  15031571 aaatgctctcaccggacaaattccaccttccataggtaatttgattaatttggattacatttccctttcacaaaataatctctctggaccaattcca 15031667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 15031577 - 15031625
Alignment:
Q  109 tctcactggacaaattccaccttccataggtaacttgatcaatttggat 157  Q
    |||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  15031577 tctcaccggacaaattccaccttccataggtaatttgattaatttggat 15031625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 15016225 - 15016311
Alignment:
Q  239 ctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattatttacctttcaataaataatctctc 325  Q
    |||||||| |||||| |||||||||||||||| ||||| ||| || || |||||| ||| | |||||||||||   |||||||||||    
T  15016225 ctcaaatgatctcaccggacaaattccacctttcatagataatttaattaatttgcatactctttacctttcatacaataatctctc 15016311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 15039879 - 15039929
Alignment:
Q  259 aaattccaccttccataggtaacttgatcaatttggatattatttaccttt 309  Q
    ||||||||||||| || |||||| |||||||||||||||||||| ||||||    
T  15039879 aaattccaccttcaattggtaacctgatcaatttggatattattgaccttt 15039929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 14523520 - 14523455
Alignment:
Q  201 atcggaaatttaacgaaagcaagtagattatcatttttctcaaatgctctcactggacaaattcca 266  Q
    ||||||||||||||||||| ||||  |||||| ||| |||||||||||||| ||||| | ||||||    
T  14523520 atcggaaatttaacgaaagtaagtgaattatcttttctctcaaatgctctctctggaaatattcca 14523455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 15016233 - 15016297
Alignment:
Q  108 atctcactggacaaattccaccttccataggtaacttgatcaatttggatactatttacctttca 172  Q
    ||||||| |||||||||||||||| ||||| ||| || || |||||| ||||| |||||||||||    
T  15016233 atctcaccggacaaattccacctttcatagataatttaattaatttgcatactctttacctttca 15016297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 331
Target Start/End: Original strand, 15010119 - 15010202
Alignment:
Q  248 tctcactggacaaattccaccttccataggtaacttgatcaatttggatattatttacctttcaataaataatctctcaggacc 331  Q
    |||| |||||| ||||||||||||||||||||| ||||  |||||||||    ||| |||||||  |||||||||||| |||||    
T  15010119 tctctctggaccaattccaccttccataggtaatttgactaatttggattacttttccctttcacaaaataatctctctggacc 15010202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 15039879 - 15039929
Alignment:
Q  120 aaattccaccttccataggtaacttgatcaatttggatactatttaccttt 170  Q
    ||||||||||||| || |||||| ||||||||||||||| |||| ||||||    
T  15039879 aaattccaccttcaattggtaacctgatcaatttggatattattgaccttt 15039929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 15016112 - 15016173
Alignment:
Q  270 tccataggtaacttgatcaatttggatattatttacctttcaataaataatctctcaggacc 331  Q
    ||||||||||| ||||| |||||||||| |||| ||||||||  ||||||| |||| |||||    
T  15016112 tccataggtaatttgattaatttggatactattaacctttcagaaaataatatctctggacc 15016173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 15016112 - 15016153
Alignment:
Q  59 tccataggtaacttgatcaatttggatactatttacctttca 100  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||    
T  15016112 tccataggtaatttgattaatttggatactattaacctttca 15016153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 15016112 - 15016153
Alignment:
Q  131 tccataggtaacttgatcaatttggatactatttacctttca 172  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||    
T  15016112 tccataggtaatttgattaatttggatactattaacctttca 15016153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 15016225 - 15016297
Alignment:
Q  28 ctcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatttacctttca 100  Q
    |||||||| |||||| ||||||||||| || | ||||| ||| || || |||||| ||||| |||||||||||    
T  15016225 ctcaaatgatctcaccggacaaattccacctttcatagataatttaattaatttgcatactctttacctttca 15016297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 11741 - 11802
Alignment:
Q  235 ttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggat 296  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  11741 ttttctcaaatgctctcaccggacaaattccacattccataggtaacttggtcaatttggat 11802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 11597 - 11664
Alignment:
Q  235 ttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattatt 302  Q
    ||||||||||||||||||| |||||||||||||||||||||  ||||||| |||||||||||| ||||    
T  11597 ttttctcaaatgctctcaccggacaaattccaccttccatatataacttggtcaatttggatactatt 11664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 11885 - 11946
Alignment:
Q  235 ttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggat 296  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| ||||||    
T  11885 ttttctcaaatgctctcaccggacaaattccaccttccattggtaacttggtcaacttggat 11946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 11601 - 11664
Alignment:
Q  28 ctcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatt 91  Q
    ||||||||||||||| ||||||||||| || ||||||  ||||||| |||||||||||||||||    
T  11601 ctcaaatgctctcaccggacaaattccaccttccatatataacttggtcaatttggatactatt 11664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 11745 - 11808
Alignment:
Q  28 ctcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatt 91  Q
    ||||||||||||||| ||||||||||| |  ||||||||||||||| ||||||||||| |||||    
T  11745 ctcaaatgctctcaccggacaaattccacattccataggtaacttggtcaatttggattctatt 11808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 11610 - 11664
Alignment:
Q  109 tctcactggacaaattccaccttccataggtaacttgatcaatttggatactatt 163  Q
    |||||| |||||||||||||||||||||  ||||||| |||||||||||||||||    
T  11610 tctcaccggacaaattccaccttccatatataacttggtcaatttggatactatt 11664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 11754 - 11808
Alignment:
Q  109 tctcactggacaaattccaccttccataggtaacttgatcaatttggatactatt 163  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||||| |||||    
T  11754 tctcaccggacaaattccacattccataggtaacttggtcaatttggattctatt 11808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 11889 - 11952
Alignment:
Q  28 ctcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatt 91  Q
    ||||||||||||||| ||||||||||| || ||||| ||||||||| |||| |||||| |||||    
T  11889 ctcaaatgctctcaccggacaaattccaccttccattggtaacttggtcaacttggattctatt 11952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 11898 - 11952
Alignment:
Q  109 tctcactggacaaattccaccttccataggtaacttgatcaatttggatactatt 163  Q
    |||||| |||||||||||||||||||| ||||||||| |||| |||||| |||||    
T  11898 tctcaccggacaaattccaccttccattggtaacttggtcaacttggattctatt 11952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 12384 - 12445
Alignment:
Q  235 ttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggat 296  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  12384 ttttctcaaatgctctcaccggacaaattccacattccataggtaacttggtcaatttggat 12445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 12240 - 12307
Alignment:
Q  235 ttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattatt 302  Q
    ||||||||||||||||||| |||||||||||||||||||||  ||||||| |||||||||||| ||||    
T  12240 ttttctcaaatgctctcaccggacaaattccaccttccatatataacttggtcaatttggatactatt 12307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 12528 - 12589
Alignment:
Q  235 ttttctcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggat 296  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| ||||||    
T  12528 ttttctcaaatgctctcaccggacaaattccaccttccattggtaacttggtcaacttggat 12589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 12244 - 12307
Alignment:
Q  28 ctcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatt 91  Q
    ||||||||||||||| ||||||||||| || ||||||  ||||||| |||||||||||||||||    
T  12244 ctcaaatgctctcaccggacaaattccaccttccatatataacttggtcaatttggatactatt 12307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 12388 - 12451
Alignment:
Q  28 ctcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatt 91  Q
    ||||||||||||||| ||||||||||| |  ||||||||||||||| ||||||||||| |||||    
T  12388 ctcaaatgctctcaccggacaaattccacattccataggtaacttggtcaatttggattctatt 12451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 12253 - 12307
Alignment:
Q  109 tctcactggacaaattccaccttccataggtaacttgatcaatttggatactatt 163  Q
    |||||| |||||||||||||||||||||  ||||||| |||||||||||||||||    
T  12253 tctcaccggacaaattccaccttccatatataacttggtcaatttggatactatt 12307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 12397 - 12451
Alignment:
Q  109 tctcactggacaaattccaccttccataggtaacttgatcaatttggatactatt 163  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||||| |||||    
T  12397 tctcaccggacaaattccacattccataggtaacttggtcaatttggattctatt 12451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 12532 - 12595
Alignment:
Q  28 ctcaaatgctctcactggacaaattcccccctccataggtaacttgatcaatttggatactatt 91  Q
    ||||||||||||||| ||||||||||| || ||||| ||||||||| |||| |||||| |||||    
T  12532 ctcaaatgctctcaccggacaaattccaccttccattggtaacttggtcaacttggattctatt 12595  T

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Target: scaffold0365; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 12541 - 12595
Alignment:
Q  109 tctcactggacaaattccaccttccataggtaacttgatcaatttggatactatt 163  Q
    |||||| |||||||||||||||||||| ||||||||| |||| |||||| |||||    
T  12541 tctcaccggacaaattccaccttccattggtaacttggtcaacttggattctatt 12595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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