View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4705_high_2 (Length: 440)
Name: NF4705_high_2
Description: NF4705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4705_high_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 29 - 440
Target Start/End: Complemental strand, 36331831 - 36331420
Alignment:
| Q |
29 |
agaaaccaattgggatgattggcaaggatggtggtgggatgttgaaatgtttggtaattcttgtgtccattgtgaagccttgctggactgagaaggtttg |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36331831 |
agaaaccaattgggatgattggcaaggatggtggtgggatgttgaaatgtttggtgattcttgtgtccattgtgaagccttgttggactgagaaggtttg |
36331732 |
T |
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| Q |
129 |
aagctgtgctaagcaaagagtcattatgattgtgcagcagaatattggaatcatgcttaggattattttggcattttctacttgtgtaactctgcatagt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36331731 |
aagctgtgctaagcaaagagtcattatgattgtgcaacagaatattggaatcatgcttaggattattttggcattttctacttgtgtaactctgcatagt |
36331632 |
T |
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| Q |
229 |
ttccatggatttggaatctcttgtttttcagattgtaaatcatcagattttctttcaatggctgctttgtccaagaacctgtgcaacaattttatgatgt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36331631 |
ttccatggatttggaatctcttgtttttcagattgtaaatcatcagattttctttcaatggctgctttgtccaagaacctgtgcaacaattttacgatgt |
36331532 |
T |
|
| Q |
329 |
tagcatgattaattttacgcgtttttgctgataaaacttaagtgtttttactcgttgtccaaatatcaaacttaagtgtttttactcatcgagatttcag |
428 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36331531 |
tagcatgagtaattttacgcgtttttgctgataaaacttaagtgtttttactcgttgtccaaatatcaaacttaagtgtttttactcatcgagatttcag |
36331432 |
T |
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| Q |
429 |
atgaaagtgtgt |
440 |
Q |
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| T |
36331431 |
atgaaagtgtgt |
36331420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 29 - 314
Target Start/End: Complemental strand, 36324570 - 36324288
Alignment:
| Q |
29 |
agaaaccaattgggatgattggcaaggatggtggtgggatgttgaaatgtttggtaattcttgtgtccattgtgaagccttgctggactgagaaggtttg |
128 |
Q |
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||||| ||| |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
36324570 |
agaaaacaactgggatgattggtaaggatgctggtgggatgttgaaatgtttggtgattcttgtgtccattgtgaagccttgttggactgaaaaggtttg |
36324471 |
T |
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| Q |
129 |
aagctgtgctaagcaaagagtcattatgattgtgcagcagaatattggaatcatgcttaggattattttggcattttctacttgtgtaactctgcatagt |
228 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
36324470 |
aagctgtgctaagcaaagagtcattatgattgtacagaagaatactgggatcatgcttagaaatattttggcattttctacttgtgtaactctgcatagt |
36324371 |
T |
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| Q |
229 |
ttccatggatttggaatctcttgtttttcagattgtaaatcatcagattttctttcaatggctgctttgtccaagaacctgtgcaa |
314 |
Q |
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|||||||| ||||| ||||||| |||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36324370 |
ttccatgggcttggattctcttgcttttcaagttgta---catcagattttctttctatggctgctttgtccaagaacctgtgcaa |
36324288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 237
Target Start/End: Complemental strand, 5459824 - 5459624
Alignment:
| Q |
37 |
attgggatgattggcaaggatggtggtgggatgttgaaatgtttggtaattcttgtgtccattgtgaagccttgctggactgagaaggtttgaagctgtg |
136 |
Q |
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|||||||||| ||| | ||||| |||||||||| ||||||||||| | | |||||||||| ||| ||||||| | || ||| |||||||| || || | |
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| T |
5459824 |
attgggatgaatgggagggatgcgggtgggatgtgaaaatgtttggtgacttttgtgtccatggtgtagccttgttcgattgaaaaggtttggagttgag |
5459725 |
T |
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| Q |
137 |
ctaagcaaagagtcattatgattgtgcagcagaatattggaatcatgcttaggattattttggcattttctacttgtgtaactctgcatagtttccatgg |
236 |
Q |
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| T |
5459724 |
ctaggcaaagggtcattataattgtacaacagaatattggaaccatgctgagaaggattttggcattttctacttgtgtaaccctgcaaagtttccatgg |
5459625 |
T |
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| Q |
237 |
a |
237 |
Q |
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| T |
5459624 |
a |
5459624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 45661043 - 45660986
Alignment:
| Q |
106 |
ccttgctggactgagaaggtttgaagctgtgctaagcaaagagtcattatgattgtgc |
163 |
Q |
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| T |
45661043 |
ccttgctgtactgagaatgtttgaagctgtgctaaacaagtgttcattatgattgtgc |
45660986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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