View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4705_high_8 (Length: 341)
Name: NF4705_high_8
Description: NF4705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4705_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 10303222 - 10303536
Alignment:
| Q |
10 |
ataatactcgaaggattaatttcctcagttgcgcgctgaagatacccgatttacgcaccaaaattgtggtattgaaataatctagaagtatataggccaa |
109 |
Q |
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| T |
10303222 |
ataatactcaagggattaatttcctcagttgcatgctgaagatgctcggtttacgcaccaaaattgtaatattgaaataatctagaagtatataggccat |
10303321 |
T |
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| Q |
110 |
gaattatcctcagcaagaatacgcatactattgaaactctgattataaggtggacaaatggcatctaattcttatcttctataaccaataatcagaggaa |
209 |
Q |
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| T |
10303322 |
gaattatcctcagcaagaatacgcatactattgaaactctgattataaggtggacaaatggcatctaattcttatcttctataaccaataatcataggaa |
10303421 |
T |
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| Q |
210 |
agaaaggttatcagtgaaagttctttgggtatcttcaaagtcgtttacaacttcatttggttgattttaaggctaattaggtccgtttattttatgtttc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10303422 |
agaaaggttatcagtgaaagttctttgggtatcttcaaagtcgtttacaacttcatttggttgattttaaggctaattaggtccgtttattttatgtttc |
10303521 |
T |
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| Q |
310 |
tattttccacatatt |
324 |
Q |
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|||||| |||||||| |
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| T |
10303522 |
tatttttcacatatt |
10303536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 42741842 - 42741790
Alignment:
| Q |
10 |
ataatactcgaaggattaatttcctcagttgcgcgctgaagatacccgattta |
62 |
Q |
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| T |
42741842 |
ataatactcgagggattaatctctgcagttgcgcgcggaggatacccgattta |
42741790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 35774695 - 35774743
Alignment:
| Q |
12 |
aatactcgaaggattaatttcctcagttgcgcgctgaagatacccgatt |
60 |
Q |
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||||||||| | |||||| ||||||||||| ||| |||||||||||||| |
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| T |
35774695 |
aatactcgatgaattaatctcctcagttgcacgcggaagatacccgatt |
35774743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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