View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4706-Insertion-1 (Length: 1151)
Name: NF4706-Insertion-1
Description: NF4706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4706-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 510 - 1044
Target Start/End: Original strand, 43744632 - 43745176
Alignment:
| Q |
510 |
gttataaaagggtggtgaggatacattattatacttcataggtttgaccattccaatccctacggcatacatgcaaattgaatagttttagggaccctaa |
609 |
Q |
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| T |
43744632 |
gttataaaagggtggtgaggatacattattatacttcataggtttgaccattccaatccctacggcatacatgcaaattgaatagttttagggaccctaa |
43744731 |
T |
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| Q |
610 |
ataatgcccacctcatagcataaaatttaaaataatcagatttgtcaaatcttaataaagtaattagccgatcaataatcttgagaaagagtgc----gt |
705 |
Q |
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| T |
43744732 |
ataatgcccacctcatagcataaaatttaaaataatcagatttgtcaaatcttaataaagtaattagccgatcaataatcttgagaaagagtgcgtatgt |
43744831 |
T |
|
| Q |
706 |
atatagtatagtattaggtgaccaatgatattaatgaacatatgatgtgtggaatagcacaaccaatggtggc----ataaaagaattttatcataagag |
801 |
Q |
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| T |
43744832 |
atatagtatagtatcaggtgaccaatgatattaatgaacatatgatgtgtggaatagcacaagtaatggtggcatatataaaagaattttatcatatgag |
43744931 |
T |
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| Q |
802 |
gggatcacatcaaagcttagtgagtttaaagagaatgataatttgcaaacctttgtagtgcaccctaactttcatatttcccctacgtgcaagcactatt |
901 |
Q |
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| T |
43744932 |
gggatcacatcaaagcttagtgagtttaaagagaatgataatttgcaaacctttgtagtgcaccctaactttcatattt-ccctacgtgcaagcactatt |
43745030 |
T |
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| Q |
902 |
attttcgtaataatttacgtcccttacttgtaatctaaggctgcttcccgtatatcatatgatggg-tactaagttaaatgctacta-cagctt-cacaa |
998 |
Q |
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| T |
43745031 |
attttcgtaataatttacgtcccttacttgtaatctaaggctgcttcccgtatatcatatgatgggttactaagttaaatgctactaccagcttccacaa |
43745130 |
T |
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| Q |
999 |
caatttgcacgcatcatatcatatcatataaattataattaccttt |
1044 |
Q |
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| T |
43745131 |
caatttgcacgcatcatatcatatcatataaattataattaccttt |
43745176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 8 - 520
Target Start/End: Original strand, 43743712 - 43744226
Alignment:
| Q |
8 |
gtttctattaatattattatgaatcttatttggtgcttacgtgaatgtacattgaacttgtttgtaattgcatctttaagaatagactgacaccgagatt |
107 |
Q |
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| T |
43743712 |
gtttctattaatattattatgaatcttatttggtgcttacgtgaatgtacattgaacttgtttgtaattgcatctttaagaatagactgacaccgagatt |
43743811 |
T |
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| Q |
108 |
ccggaactagctacccagggaacctactggatatcattacatataattttgtgtttccaannnnnnnnacattcacatttgataaagattcattgcatat |
207 |
Q |
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| T |
43743812 |
ccggaactagctacccagggaacctactggatatcattacatataattttgtgtttccaattttttttacgttcacatttgataaagattcattacatat |
43743911 |
T |
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| Q |
208 |
ct--gagttcattttccttcaaaaacaagttcatttgataatcgtattttaaagaagtacagtagaatatattaatttttattggaggtcaatttaaaat |
305 |
Q |
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| T |
43743912 |
atatgagttcattttccttcaaaaacaagttcatttgataatcgtattttaaaaaagtacagtagaatatattaatttttattggaggtcaatttaaaat |
43744011 |
T |
|
| Q |
306 |
tagttcaaggtacgttttctatttannnnnnncttatctaaaactatactttgaccgtaccacattcatcttctgtgtttggattcaatatatgccgcaa |
405 |
Q |
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| T |
43744012 |
tagttcaaggtacgttttctatttatttttttcttatctaaaactatactttgaccataccacattcatcttctgtgtttggattcaatatatgccgcaa |
43744111 |
T |
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| Q |
406 |
aacgctgaaaatagagttactttgctgactgtaacgggaagctttctcattcaattaaaaaatggaaagaattggaatcctaattaattgaaaatgataa |
505 |
Q |
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| T |
43744112 |
aacgctgaaaatagagttactttgctgactgtaacgggaagctttctcattcaattaaaaaatggaaagaattggaatcctaattaattgaaaatgataa |
43744211 |
T |
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| Q |
506 |
acgggttataaaagg |
520 |
Q |
| |
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||||||||||||||| |
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| T |
43744212 |
acgggttataaaagg |
43744226 |
T |
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Back To:
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