View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4706-Insertion-2 (Length: 1045)
Name: NF4706-Insertion-2
Description: NF4706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4706-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 706; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 7 - 742
Target Start/End: Complemental strand, 4071760 - 4071028
Alignment:
| Q |
7 |
agtagtaactaacgagagtatataaatactattagggttggagagatagggtaactgttacacgataattaagaagtactatatcctattataactagta |
106 |
Q |
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| T |
4071760 |
agtagtaactaacgagagtatataaatactattagggttggagagataaggtaactgttacacgataattaagaagta---tatcctattataactagta |
4071664 |
T |
|
| Q |
107 |
tatagaaggtgttcatttatataagatttaattgtagtattttgctctcttatacaatgtacatattggaagcttaatttacatgcattttaatccagag |
206 |
Q |
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| T |
4071663 |
tatagaaggtgttcatttatataagatttaattgtagtattttgctctcttatacaatgtacatattggaagcttaatttacatgcattttaatccagag |
4071564 |
T |
|
| Q |
207 |
tttaaagaaaaaataattaatatctgtaatgtaaacgttgcttcccaactaagccagccatatcgtgatgtggtgggtttgttatagaaatggaggatat |
306 |
Q |
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| T |
4071563 |
tttaaagaaaaaataattaatatctgtaatgtaaacgttgcttcccaactaagccagccatatcgtgatgtggtgggtttgttatagaaatggaggatat |
4071464 |
T |
|
| Q |
307 |
acatacttatatggtattactattgagtatattgacaagtcaatagcgtattggtaatgcaattatgggactcatcatcatgcgtgttttgttttatata |
406 |
Q |
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| T |
4071463 |
acatacttatatggtattactattgagtatattgacaagtcaatagcgtattggtaatgcaattatgggactcatcatcatgcgtgttttgttttatata |
4071364 |
T |
|
| Q |
407 |
aatagatgaattcattgatacaaaacgaccaaaccttactacaattttccttaatatatatgagttctctaatttatatttttcttgtggtcgtccttgt |
506 |
Q |
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| T |
4071363 |
aatagatgaattcattgatacaaaacgaccaaaccttactacaattttccttaatatacatgagttctctaatttatatttttcttgtggtcgtccttgt |
4071264 |
T |
|
| Q |
507 |
tcctcatgttgttcttgctagagaaattatgagaagtgaagaaataatatttgatcaaaattacaaggtcacatggggtgacaatcatgttatttccata |
606 |
Q |
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| T |
4071263 |
tcctcatgttgttcttgctagagaaattatgagaagtgaagaaataatatttgatcaaaattacaaggtcacatggggtgacaatcatgttatttccata |
4071164 |
T |
|
| Q |
607 |
aaccaaaggaaagaaattcagctcacaatggattactcttcaggttatagtcaaccatttattatccctcaattattctttcgctccttttaacttccac |
706 |
Q |
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| T |
4071163 |
aaccaaaggaaagaaattcagctcacaatggattactcttcaggttatagtcaaccatttattatccctcaattattctttcactccttttaaattccac |
4071064 |
T |
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| Q |
707 |
gtatatatctttagtttccccttcccataaataaat |
742 |
Q |
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| T |
4071063 |
gtatatatctttagtttccccttcccataaataaat |
4071028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 775 - 1043
Target Start/End: Complemental strand, 4070977 - 4070707
Alignment:
| Q |
775 |
agttgtaaccaaaaaataatatagacacacaagtaagtatctctaaccttcacttatattactcaattcctaagtactatatccccttttgaaatttnnn |
874 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
4070977 |
agttgtaaccaaaaaataatatagacacacaagtaagtatctctaaccttcacttatattactcaattcctaagtactatatcccttttttaaatttaaa |
4070878 |
T |
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| Q |
875 |
nnnnnnnnnnnnnngttattgtgtgtgatcatcacttta-ctatatatgcctaaattaacatacacatcaactaaaagatannnnnnnnnnnnattacga |
973 |
Q |
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| T |
4070877 |
aaaaaaataaaaaggttattgtttgtgatcatcactttacctatatatgcctaaattaacatacacatcaactaaaagata---attttttttattacga |
4070781 |
T |
|
| Q |
974 |
taaat-aatttagattaaggagtaaagtcatg-aaaacca-caagctcattaaaaag-aactacttgtgtgaac |
1043 |
Q |
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| T |
4070780 |
taaataaatttagattaaggagtaaagtcatgaaaaaccaccaagctcattaaaaagaaactacttgtgtgaac |
4070707 |
T |
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