View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4706-Insertion-3 (Length: 762)

Name: NF4706-Insertion-3
Description: NF4706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4706-Insertion-3
NF4706-Insertion-3
[»] chr2 (5 HSPs)
chr2 (8-666)||(5245487-5246143)
chr2 (433-509)||(27282520-27282596)
chr2 (435-508)||(43311961-43312034)
chr2 (592-665)||(43903879-43903952)
chr2 (614-666)||(44030359-44030411)
[»] chr5 (11 HSPs)
chr5 (430-508)||(8880873-8880951)
chr5 (430-508)||(32685128-32685206)
chr5 (435-509)||(5513409-5513483)
chr5 (431-509)||(13300041-13300119)
chr5 (431-509)||(13301737-13301815)
chr5 (588-666)||(35885757-35885835)
chr5 (592-665)||(3432374-3432447)
chr5 (593-666)||(4630394-4630467)
chr5 (592-665)||(16167773-16167846)
chr5 (454-509)||(39413583-39413638)
chr5 (626-665)||(18511011-18511050)
[»] chr4 (8 HSPs)
chr4 (430-508)||(25750458-25750536)
chr4 (428-508)||(45039347-45039427)
chr4 (584-666)||(7328082-7328164)
chr4 (587-665)||(7984522-7984600)
chr4 (589-665)||(40818918-40818994)
chr4 (591-666)||(29275980-29276055)
chr4 (592-665)||(42243861-42243934)
chr4 (591-650)||(32270446-32270505)
[»] chr6 (1 HSPs)
chr6 (428-509)||(5635429-5635510)
[»] chr1 (13 HSPs)
chr1 (427-508)||(34405767-34405848)
chr1 (425-508)||(34408901-34408984)
chr1 (434-508)||(2711831-2711905)
chr1 (435-509)||(17983386-17983460)
chr1 (587-665)||(31972643-31972721)
chr1 (433-508)||(2271865-2271940)
chr1 (433-508)||(31565463-31565538)
chr1 (431-508)||(2273266-2273343)
chr1 (433-508)||(5344201-5344276)
chr1 (425-487)||(34410344-34410406)
chr1 (434-489)||(25493208-25493263)
chr1 (435-509)||(42054556-42054630)
chr1 (600-650)||(395465-395515)
[»] chr7 (9 HSPs)
chr7 (429-508)||(45940023-45940102)
chr7 (435-509)||(41294149-41294223)
chr7 (591-666)||(9901987-9902062)
chr7 (591-666)||(28029717-28029792)
chr7 (591-666)||(36430592-36430667)
chr7 (593-665)||(21515991-21516063)
chr7 (600-650)||(18343920-18343970)
chr7 (600-650)||(18344823-18344873)
chr7 (600-650)||(18347449-18347499)
[»] scaffold0471 (1 HSPs)
scaffold0471 (434-508)||(1282-1356)
[»] chr8 (6 HSPs)
chr8 (434-508)||(36111409-36111483)
chr8 (591-666)||(12132469-12132544)
chr8 (591-666)||(14694828-14694903)
chr8 (591-665)||(4362757-4362831)
chr8 (592-666)||(33332315-33332389)
chr8 (429-490)||(10436523-10436584)
[»] chr3 (2 HSPs)
chr3 (434-508)||(43559542-43559616)
chr3 (600-650)||(45082763-45082813)


Alignment Details
Target: chr2 (Bit Score: 535; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 8 - 666
Target Start/End: Original strand, 5245487 - 5246143
Alignment:
Q  8 gataatatgtctaaatcagattcaggcaaaacttccctttttcttcttgcaaagagacaagtaccaccttcgggaccaagccatagaggaaataacgcac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5245487 gataatatgtctaaatcagattcaggcaaaacttccctttttcttcttgcaaagagacaagtaccaccttcgggaccaagccatagaggaaataacgcac 5245586  T
Q  108 cacattagagttaagccattgaaatatattatgtatctaagttaatgtactctttggatcaatatattcaagaataaatggaaggagagatcctatatag 207  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5245587 cacattagagttaagccattgaaatatattatgcatctaagttaatgtactctttggatcaatatattcaagaataaatggaaggagagatcctatatag 5245686  T
Q  208 tttttcatcattatgtgattttatgaattgataggagttggaactcatcatatatttctaccctttgttttattttttataaaatgtccgttttttgttc 307  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5245687 tttttcatcatcatgtgattttatgaattgataggagttggaactcgtcatatatttctaccctttattttattttttataaaatgtccgttttttgttc 5245786  T
Q  308 ataagtggcccttttatctttacacgttcatgacttcagtcagattatttaatcaaatcattctcaaacattcgtagaacaaacgtttatcaatataatt 407  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||    
T  5245787 ataagtggcccttttatttttacacgttcatgacttcagtcagattatttaatcaaatcattctcaaacattcgcagaacaaatgtttaccaatataatt 5245886  T
Q  408 aagttaaaaccttgaagaataacaaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcc 507  Q
    ||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5245887 aagataaaaccttgaaaaatatcaaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcc 5245986  T
Q  508 aannnnnnnnnnnnnnnngtatcaaaatgtaaaataatacaatttatacactatttatatttctgaatatcaagactaccaataagcccgtctagctcag 607  Q
    |                 |||||||||||||||||||||| || ||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||    
T  5245987 a--ctttttttcatttttgtatcaaaatgtaaaataatacgatgtatacactatttataattctgaatataaagattaccaataagcccgtctagctcag 5246084  T
Q  608 ttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcga 666  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5246085 ttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcga 5246143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 433 - 509
Target Start/End: Original strand, 27282520 - 27282596
Alignment:
Q  433 atggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27282520 atggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 27282596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 43312034 - 43311961
Alignment:
Q  435 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43312034 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 43311961  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 592 - 665
Target Start/End: Complemental strand, 43903952 - 43903879
Alignment:
Q  592 agcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcg 665  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43903952 agcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcg 43903879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 614 - 666
Target Start/End: Original strand, 44030359 - 44030411
Alignment:
Q  614 gagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcga 666  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44030359 gagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcga 44030411  T

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Target: chr5 (Bit Score: 79; Significance: 2e-36; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 430 - 508
Target Start/End: Complemental strand, 8880951 - 8880873
Alignment:
Q  430 caaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8880951 caaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 8880873  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 430 - 508
Target Start/End: Complemental strand, 32685206 - 32685128
Alignment:
Q  430 caaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32685206 caaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 32685128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 5513483 - 5513409
Alignment:
Q  435 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5513483 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 5513409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 431 - 509
Target Start/End: Complemental strand, 13300119 - 13300041
Alignment:
Q  431 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13300119 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgagacctgcatgggccaa 13300041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 431 - 509
Target Start/End: Complemental strand, 13301815 - 13301737
Alignment:
Q  431 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13301815 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgagacctgcatgggccaa 13301737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 588 - 666
Target Start/End: Complemental strand, 35885835 - 35885757
Alignment:
Q  588 aataagcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcga 666  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35885835 aataagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcga 35885757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 592 - 665
Target Start/End: Original strand, 3432374 - 3432447
Alignment:
Q  592 agcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcg 665  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3432374 agcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcg 3432447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 593 - 666
Target Start/End: Original strand, 4630394 - 4630467
Alignment:
Q  593 gcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcga 666  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4630394 gcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcga 4630467  T

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Target: chr5; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 592 - 665
Target Start/End: Original strand, 16167773 - 16167846
Alignment:
Q  592 agcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcg 665  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16167773 agcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcg 16167846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 454 - 509
Target Start/End: Original strand, 39413583 - 39413638
Alignment:
Q  454 ttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 509  Q
    |||||||||||||||| |||||||||||||||||||| || |||| ||||||||||    
T  39413583 ttagagcgtcgtgctattaacgcgaaggtcgcaggtttgagacctacatgggccaa 39413638  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 665
Target Start/End: Original strand, 18511011 - 18511050
Alignment:
Q  626 cttaactttgtggtcgtgggttcgagccccacggtgggcg 665  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  18511011 cttaacctcgtggtcgtgggttcgagccccacggtgggcg 18511050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 430 - 508
Target Start/End: Original strand, 25750458 - 25750536
Alignment:
Q  430 caaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25750458 caaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 25750536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 428 - 508
Target Start/End: Original strand, 45039347 - 45039427
Alignment:
Q  428 aacaaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45039347 aacaagtggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 45039427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 584 - 666
Target Start/End: Complemental strand, 7328164 - 7328082
Alignment:
Q  584 taccaataagcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcga 666  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7328164 taccaacaagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcga 7328082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 587 - 665
Target Start/End: Original strand, 7984522 - 7984600
Alignment:
Q  587 caataagcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcg 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7984522 caataagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcg 7984600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 589 - 665
Target Start/End: Complemental strand, 40818994 - 40818918
Alignment:
Q  589 ataagcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcg 665  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40818994 ataagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcg 40818918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 591 - 666
Target Start/End: Complemental strand, 29276055 - 29275980
Alignment:
Q  591 aagcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcga 666  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29276055 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcga 29275980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 592 - 665
Target Start/End: Original strand, 42243861 - 42243934
Alignment:
Q  592 agcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcg 665  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42243861 agcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcg 42243934  T

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Target: chr4; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 591 - 650
Target Start/End: Original strand, 32270446 - 32270505
Alignment:
Q  591 aagcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcga 650  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32270446 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcga 32270505  T

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Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 428 - 509
Target Start/End: Complemental strand, 5635510 - 5635429
Alignment:
Q  428 aacaaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5635510 aacaaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcaaaacctgcatgggccaa 5635429  T

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Target: chr1 (Bit Score: 78; Significance: 6e-36; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 427 - 508
Target Start/End: Original strand, 34405767 - 34405848
Alignment:
Q  427 taacaaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34405767 taacaagtggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 34405848  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 425 - 508
Target Start/End: Original strand, 34408901 - 34408984
Alignment:
Q  425 aataacaaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34408901 aataacaagcggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 34408984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 434 - 508
Target Start/End: Complemental strand, 2711905 - 2711831
Alignment:
Q  434 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2711905 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 2711831  T

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Target: chr1; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 17983460 - 17983386
Alignment:
Q  435 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17983460 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 17983386  T

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Target: chr1; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 587 - 665
Target Start/End: Complemental strand, 31972721 - 31972643
Alignment:
Q  587 caataagcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcg 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31972721 caataagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcg 31972643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 433 - 508
Target Start/End: Original strand, 2271865 - 2271940
Alignment:
Q  433 atggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  2271865 atggcccattagctcagttggttagagcgttgtgctaataacgcaaaggtcgcaggttcgaaacctgcatgggcca 2271940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 433 - 508
Target Start/End: Complemental strand, 31565538 - 31565463
Alignment:
Q  433 atggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31565538 atggcccattagcttagttggttagagcgtcgtgctaataacgtgaaggtcgcaggttcgaaacctgcatgggcca 31565463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 431 - 508
Target Start/End: Original strand, 2273266 - 2273343
Alignment:
Q  431 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || ||||||||||||||    
T  2273266 aaatggcccattagctcagttggttagagtgttgtgctaataacgcgaaggtcgcaggtttgagacctgcatgggcca 2273343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 433 - 508
Target Start/End: Original strand, 5344201 - 5344276
Alignment:
Q  433 atggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  5344201 atggcccattaacttagtgggttagagcgtcgtgctaataacgcgaaggttgcaggttcgagacctgcatgggcca 5344276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 425 - 487
Target Start/End: Original strand, 34410344 - 34410406
Alignment:
Q  425 aataacaaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcag 487  Q
    |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34410344 aatagcaattggcccattagctcagttggttagagtgtcgtgctaataacgcgaaggtcgcag 34410406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 434 - 489
Target Start/End: Original strand, 25493208 - 25493263
Alignment:
Q  434 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggt 489  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25493208 tggcctattagctcagttggttagagcgtcgtgctaataacgcgaaggttgcaggt 25493263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 435 - 509
Target Start/End: Original strand, 42054556 - 42054630
Alignment:
Q  435 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 509  Q
    |||| ||||||||| |||||||||| || |||||||||| |  |||||||||||||||| |||||||||||||||    
T  42054556 ggcctattagctcaattggttagagtgtggtgctaataaggtcaaggtcgcaggttcgagacctgcatgggccaa 42054630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 650
Target Start/End: Complemental strand, 395515 - 395465
Alignment:
Q  600 tagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcga 650  Q
    |||||||| |||||||||||| |||| |||||  |||||||||||||||||    
T  395515 tagctcagctggtagagcgcacggcttttaaccgtgtggtcgtgggttcga 395465  T

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Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 429 - 508
Target Start/End: Complemental strand, 45940102 - 45940023
Alignment:
Q  429 acaaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45940102 acaattggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 45940023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 435 - 509
Target Start/End: Original strand, 41294149 - 41294223
Alignment:
Q  435 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41294149 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaa 41294223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 591 - 666
Target Start/End: Original strand, 9901987 - 9902062
Alignment:
Q  591 aagcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcga 666  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9901987 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcga 9902062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 591 - 666
Target Start/End: Complemental strand, 28029792 - 28029717
Alignment:
Q  591 aagcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcga 666  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28029792 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcga 28029717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 591 - 666
Target Start/End: Complemental strand, 36430667 - 36430592
Alignment:
Q  591 aagcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcga 666  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36430667 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcga 36430592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 593 - 665
Target Start/End: Original strand, 21515991 - 21516063
Alignment:
Q  593 gcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcg 665  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  21515991 gcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtaggcg 21516063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 650
Target Start/End: Original strand, 18343920 - 18343970
Alignment:
Q  600 tagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcga 650  Q
    |||||||| |||||||||||| |||| |||||  |||||||||||||||||    
T  18343920 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 18343970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 650
Target Start/End: Original strand, 18344823 - 18344873
Alignment:
Q  600 tagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcga 650  Q
    |||||||| |||||||||||| |||| |||||  |||||||||||||||||    
T  18344823 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 18344873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 650
Target Start/End: Original strand, 18347449 - 18347499
Alignment:
Q  600 tagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcga 650  Q
    |||||||| |||||||||||| |||| |||||  |||||||||||||||||    
T  18347449 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 18347499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 434 - 508
Target Start/End: Original strand, 1282 - 1356
Alignment:
Q  434 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1282 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 1356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 434 - 508
Target Start/End: Original strand, 36111409 - 36111483
Alignment:
Q  434 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36111409 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 36111483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 591 - 666
Target Start/End: Original strand, 12132469 - 12132544
Alignment:
Q  591 aagcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcga 666  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12132469 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcga 12132544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 591 - 666
Target Start/End: Original strand, 14694828 - 14694903
Alignment:
Q  591 aagcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcga 666  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14694828 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcga 14694903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 591 - 665
Target Start/End: Complemental strand, 4362831 - 4362757
Alignment:
Q  591 aagcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcg 665  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4362831 aagcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcg 4362757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 592 - 666
Target Start/End: Complemental strand, 33332389 - 33332315
Alignment:
Q  592 agcccgtctagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcgagccccacggtgggcga 666  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33332389 agcccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcga 33332315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 429 - 490
Target Start/End: Original strand, 10436523 - 10436584
Alignment:
Q  429 acaaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggtt 490  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10436523 acaattggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggtt 10436584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 434 - 508
Target Start/End: Original strand, 43559542 - 43559616
Alignment:
Q  434 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43559542 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 43559616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 650
Target Start/End: Complemental strand, 45082813 - 45082763
Alignment:
Q  600 tagctcagttggtagagcgcaaggctcttaactttgtggtcgtgggttcga 650  Q
    |||||||| |||||||||||| |||| |||||  |||||||||||||||||    
T  45082813 tagctcagctggtagagcgcatggcttttaaccatgtggtcgtgggttcga 45082763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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