View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4706-Insertion-4 (Length: 616)

Name: NF4706-Insertion-4
Description: NF4706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4706-Insertion-4
NF4706-Insertion-4
[»] chr3 (10 HSPs)
chr3 (8-405)||(43616161-43616558)
chr3 (473-599)||(29438248-29438374)
chr3 (160-322)||(43609698-43609861)
chr3 (473-606)||(43615679-43615812)
chr3 (152-322)||(43603290-43603461)
chr3 (333-403)||(42914485-42914555)
chr3 (407-445)||(29438417-29438455)
chr3 (405-445)||(43615840-43615880)
chr3 (334-405)||(29313137-29313208)
chr3 (531-593)||(11985585-11985647)
[»] chr7 (9 HSPs)
chr7 (482-594)||(19362399-19362511)
chr7 (473-593)||(44598444-44598563)
chr7 (478-594)||(47967521-47967636)
chr7 (519-594)||(9698331-9698406)
chr7 (521-593)||(19113527-19113598)
chr7 (404-445)||(31642754-31642795)
chr7 (405-445)||(44598579-44598619)
chr7 (405-442)||(9698211-9698248)
chr7 (362-405)||(23705386-23705429)
[»] chr1 (8 HSPs)
chr1 (486-594)||(52453923-52454031)
chr1 (479-594)||(170872-170987)
chr1 (483-594)||(4808345-4808456)
chr1 (519-594)||(28702407-28702478)
chr1 (405-442)||(171039-171076)
chr1 (405-445)||(52453836-52453876)
chr1 (334-405)||(46906000-46906071)
chr1 (357-390)||(26673786-26673819)
[»] chr6 (3 HSPs)
chr6 (496-594)||(14533478-14533576)
chr6 (405-445)||(14533644-14533684)
chr6 (519-579)||(20613247-20613307)
[»] chr8 (3 HSPs)
chr8 (521-593)||(27084472-27084544)
chr8 (333-405)||(33285070-33285142)
chr8 (405-445)||(25430942-25430982)
[»] chr2 (6 HSPs)
chr2 (487-594)||(17623420-17623527)
chr2 (334-405)||(32532765-32532836)
chr2 (479-571)||(14735690-14735782)
chr2 (512-579)||(5887872-5887939)
chr2 (512-574)||(17303255-17303317)
chr2 (357-405)||(12287972-12288020)
[»] chr4 (6 HSPs)
chr4 (519-594)||(13564708-13564783)
chr4 (405-442)||(13564588-13564625)
chr4 (469-574)||(26494421-26494525)
chr4 (484-572)||(31523046-31523134)
chr4 (480-546)||(46852108-46852174)
chr4 (526-579)||(29096115-29096168)
[»] chr5 (7 HSPs)
chr5 (334-405)||(4870217-4870288)
chr5 (334-405)||(3631947-3632018)
chr5 (484-579)||(15974121-15974216)
chr5 (363-405)||(13106135-13106177)
chr5 (519-579)||(18768380-18768440)
chr5 (334-405)||(2977233-2977304)
chr5 (363-405)||(13036145-13036187)
[»] scaffold0060 (1 HSPs)
scaffold0060 (519-593)||(35661-35735)


Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 405
Target Start/End: Complemental strand, 43616558 - 43616161
Alignment:
Q  8 aatataccatgagcaactctaattaattcaccacatcataactcatatcaacattagctatataagtcttacagtattccttcatgtaatcaacattctc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43616558 aatataccatgagcaactctaattaattcaccacatcataactcatatcaacattagctatataagtcttacagtattccttcatgtaatcaacattctc 43616459  T
Q  108 tttacgaataaaatttttatattacttttctgtaatgaagcttagatgaaaattaatgtggttttccaaaatttacctgagcataacagcaaagaagaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43616458 tttacgaataaaatttttatattacttttctgtaatgaagcttagatgaaaattaatgtggttttccaaaatttacctgagcataacagcaaagaagaat 43616359  T
Q  208 gttgaagccggaagacagttaacaattgcagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43616358 gttgaagccggaagacagttaacaattgcagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaa 43616259  T
Q  308 acaacaaagtaggatcattgacccgattaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 405  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43616258 acaacaaagtaggatcatagacccgattaattcaaggtcctctcaattcttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 43616161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 473 - 599
Target Start/End: Complemental strand, 29438374 - 29438248
Alignment:
Q  473 ttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 572  Q
    |||||||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29438374 ttcatggtaccccctttccactgcaccagctcaattcaaattgatattatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 29438275  T
Q  573 ctacccccaaagagatccgcccttgcc 599  Q
    || ||||||||||||||||||| ||||    
T  29438274 ctgcccccaaagagatccgcccctgcc 29438248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 160 - 322
Target Start/End: Complemental strand, 43609861 - 43609698
Alignment:
Q  160 ttaatgtggttttccaaaatttacctgagcataacagcaaagaagaatgttgaagccggaagacagttaacaattgcagcagccaacatagcagacgtgt 259  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| ||| || ||||||||| || |    
T  43609861 ttaatgtggttttcaaaaatttacctgagcagaacagcaaagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcagaagtat 43609762  T
Q  260 aagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaa-caacaaagtaggat 322  Q
    ||| |||||||| ||||| |||||||| ||||||||||| ||||||||| |||| |||||||||    
T  43609761 aagaaagagcaacaccatgcacattcagagttaaagtaagtctgaaaaagcaaccaagtaggat 43609698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 473 - 606
Target Start/End: Complemental strand, 43615812 - 43615679
Alignment:
Q  473 ttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 572  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||    
T  43615812 ttcatggtaccccctttccactgcagcaactcaattcagattgatgttatactcctaatatagtatataaggaaactttaggggataacatgacacctgc 43615713  T
Q  573 ctacccccaaagagatccgcccttgccctcccgg 606  Q
    || |||||||| ||| ||| || |||||||||||    
T  43615712 ctgcccccaaaaagacccgtccatgccctcccgg 43615679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 152 - 322
Target Start/End: Complemental strand, 43603461 - 43603290
Alignment:
Q  152 gatgaaaattaatgtgg-ttttccaaaatttacctgagcataacagcaaagaagaatgttgaagccggaagacagttaacaattgcagcagccaacatag 250  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||  |||| ||||| || |||||||| ||||||||||||  ||    
T  43603461 gatgaaaattaatgttgattttccaaaatttacctgagcagaacagcaaagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaag 43603362  T
Q  251 cagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaacaacaaagtaggat 322  Q
    |||| |||||| |||| |||||||||| |||||||| || ||||||||||||||||| |||| ||| |||||    
T  43603361 cagaagtgtaaacaagggcaataccatgcacattcagagctaaagtaattctgaaaagcaaccaagaaggat 43603290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 333 - 403
Target Start/End: Original strand, 42914485 - 42914555
Alignment:
Q  333 attaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctcctta 403  Q
    ||||||||||| |||||  |||  ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  42914485 attaattcaagctcctcctaatgcttgacatgtttatgcaactatcattagaaatatcaatgatctcctta 42914555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 445
Target Start/End: Complemental strand, 29438455 - 29438417
Alignment:
Q  407 ttttaaatacgatatgcaataatagaagattaaacaagt 445  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  29438455 ttttaaatacaatatgcaataatagaagattaaacaagt 29438417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 445
Target Start/End: Complemental strand, 43615880 - 43615840
Alignment:
Q  405 ttttttaaatacgatatgcaataatagaagattaaacaagt 445  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  43615880 ttttttaaatacgatattgaataatagaagattaaacaagt 43615840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 29313137 - 29313208
Alignment:
Q  334 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 405  Q
    |||||||||| ||| || |||  ||| ||||||||||| |||||||| |||||||| || ||||||||||||    
T  29313137 ttaattcaagctccccttaatgcttgacatgtttatgccactatcatcagaaatattaaggatctccttaat 29313208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 531 - 593
Target Start/End: Original strand, 11985585 - 11985647
Alignment:
Q  531 tatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 593  Q
    |||||||||||||  ||  |||||||||||| |||| |||||| ||| |||||||||||||||    
T  11985585 tatagtatataagttaatcttgggggataccgtggctcctgccgaccaccaaagagatccgcc 11985647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 6e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 482 - 594
Target Start/End: Complemental strand, 19362511 - 19362399
Alignment:
Q  482 ccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctaccccca 581  Q
    ||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19362511 ccccctttccactgcagcagctcaattcagattgatattatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctgccccca 19362412  T
Q  582 aagagatccgccc 594  Q
    |||||||||||||    
T  19362411 aagagatccgccc 19362399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 473 - 593
Target Start/End: Complemental strand, 44598563 - 44598444
Alignment:
Q  473 ttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 572  Q
    |||| ||||||||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44598563 ttcacggtaccccctttccactgcagcagctcaattcaaattaatattatactcctaatatagtatataaggaaactttgggggataccatgacacctgc 44598464  T
Q  573 ctacccccaaagagatccgcc 593  Q
    ||| |||||||||||| ||||    
T  44598463 cta-ccccaaagagatacgcc 44598444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 478 - 594
Target Start/End: Original strand, 47967521 - 47967636
Alignment:
Q  478 ggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacc 577  Q
    |||||||||||||||||  |||| ||||||| | ||| ||||||||||||||||||| |||||||||||| |||| ||||||||||||||| || || ||    
T  47967521 ggtaccccctttccactggagcagctcaatttagatttatgttatactcctaatataatatataaggaaattttgagggataccatggcacttg-ctgcc 47967619  T
Q  578 cccaaagagatccgccc 594  Q
    |||||| ||||||||||    
T  47967620 cccaaatagatccgccc 47967636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 519 - 594
Target Start/End: Original strand, 9698331 - 9698406
Alignment:
Q  519 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 594  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||    
T  9698331 ttatactcttaatatagtatataaggaaactttggaggataccatggcacctaccgtcccccaaagagatccgccc 9698406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 593
Target Start/End: Original strand, 19113527 - 19113598
Alignment:
Q  521 atactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 593  Q
    |||| ||||||| |||||||||||||| ||||||| || ||||| |||| |||||||||||||||||||||||    
T  19113527 atacacctaatacagtatataaggaaaatttgggg-atgccatgacaccagcctacccccaaagagatccgcc 19113598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 404 - 445
Target Start/End: Complemental strand, 31642795 - 31642754
Alignment:
Q  404 attttttaaatacgatatgcaataatagaagattaaacaagt 445  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  31642795 attttttaaatacaatatgcaataatagaagattaaacaagt 31642754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 445
Target Start/End: Complemental strand, 44598619 - 44598579
Alignment:
Q  405 ttttttaaatacgatatgcaataatagaagattaaacaagt 445  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  44598619 ttttttaaatacaatatgcaataatagaagattaaacaagt 44598579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 405 - 442
Target Start/End: Original strand, 9698211 - 9698248
Alignment:
Q  405 ttttttaaatacgatatgcaataatagaagattaaaca 442  Q
    |||||||||||| |||||||||||||||||||||||||    
T  9698211 ttttttaaatacaatatgcaataatagaagattaaaca 9698248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 405
Target Start/End: Complemental strand, 23705429 - 23705386
Alignment:
Q  362 atgtttatgcaactatcattagaaatatcaacgatctccttaat 405  Q
    |||||||||||||||||| |||||||||||| |||||| |||||    
T  23705429 atgtttatgcaactatcaatagaaatatcaatgatctctttaat 23705386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 486 - 594
Target Start/End: Original strand, 52453923 - 52454031
Alignment:
Q  486 ctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaaga 585  Q
    ||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  52453923 ctttccactgcagcagctcaattcaaattgatattatactcctaatatagtatataaggaaactttgggggataccatgacacttgcctgcccccaaaga 52454022  T
Q  586 gatccgccc 594  Q
    |||||||||    
T  52454023 gatccgccc 52454031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 479 - 594
Target Start/End: Complemental strand, 170987 - 170872
Alignment:
Q  479 gtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctaccc 578  Q
    ||||||||| |||||| || ||||||||||| | ||| | |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||    
T  170987 gtaccccctctccactgcaacaactcaattctagttgttattatactcctaatatactatataaggaaactttgggggatatcatggcacctgccttccc 170888  T
Q  579 ccaaagagatccgccc 594  Q
    |||||||||| |||||    
T  170887 ccaaagagattcgccc 170872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 483 - 594
Target Start/End: Complemental strand, 4808456 - 4808345
Alignment:
Q  483 cccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaa 582  Q
    ||||||||||||||||||| ||||||| | ||| |  |||||| ||||||| ||||||||||||||||||| |||||||| | ||||||||| ||| |||    
T  4808456 cccctttccactacagcaaatcaattctagttgttaatatacttctaatatggtatataaggaaactttggaggataccacgacacctgcctgccctcaa 4808357  T
Q  583 agagatccgccc 594  Q
    |||||| |||||    
T  4808356 agagattcgccc 4808345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 519 - 594
Target Start/End: Original strand, 28702407 - 28702478
Alignment:
Q  519 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 594  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||| ||||||    |||||||||||||||||||    
T  28702407 ttatactcttaatatagtatataaggaaactttgagggataccatgtcacctg----cccccaaagagatccgccc 28702478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 405 - 442
Target Start/End: Complemental strand, 171076 - 171039
Alignment:
Q  405 ttttttaaatacgatatgcaataatagaagattaaaca 442  Q
    |||||||||||| |||||||||||||||||||||||||    
T  171076 ttttttaaatacaatatgcaataatagaagattaaaca 171039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 445
Target Start/End: Original strand, 52453836 - 52453876
Alignment:
Q  405 ttttttaaatacgatatgcaataatagaagattaaacaagt 445  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  52453836 ttttttaaatacaatatgctataatagaagattaaacaagt 52453876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 46906000 - 46906071
Alignment:
Q  334 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 405  Q
    ||||||||||  || ||||||| ||||||||||||||| |||| ||| |||||| | || ||||||||||||    
T  46906000 ttaattcaagcccccctcaattcttggcatgtttatgccactaccatcagaaatgttaaggatctccttaat 46906071  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 390
Target Start/End: Original strand, 26673786 - 26673819
Alignment:
Q  357 ttggcatgtttatgcaactatcattagaaatatc 390  Q
    |||||||||||||||||||| |||||||||||||    
T  26673786 ttggcatgtttatgcaactaacattagaaatatc 26673819  T

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Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 496 - 594
Target Start/End: Complemental strand, 14533576 - 14533478
Alignment:
Q  496 cagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 594  Q
    ||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14533576 cagcagctcaatttatattgatgttatactcctaatatagtatatcaggaaactttgggggataccatggcacctgcctgcccccaaagagatccgccc 14533478  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 445
Target Start/End: Complemental strand, 14533684 - 14533644
Alignment:
Q  405 ttttttaaatacgatatgcaataatagaagattaaacaagt 445  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  14533684 ttttttaaatacaatatgcaacaatagaagattaaacaagt 14533644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 579
Target Start/End: Original strand, 20613247 - 20613307
Alignment:
Q  519 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 579  Q
    |||||| ||||||||||||||||||| || | |||||||| ||||||||||| ||| ||||    
T  20613247 ttatacacctaatatagtatataagggaaatctgggggatgccatggcacctacctgcccc 20613307  T

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Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 521 - 593
Target Start/End: Original strand, 27084472 - 27084544
Alignment:
Q  521 atactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 593  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  27084472 atacacctaatatagtatataaggaaactttgggggatgccatggcacctgccttcccccaaagagatccgcc 27084544  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 33285070 - 33285142
Alignment:
Q  333 attaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 405  Q
    ||||||| ||| ||||| ||||  ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  33285070 attaatttaagctcctcccaatgcttgacatgtttatgcaactatcattagaaatatcaacgatctgcttaat 33285142  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 445
Target Start/End: Complemental strand, 25430982 - 25430942
Alignment:
Q  405 ttttttaaatacgatatgcaataatagaagattaaacaagt 445  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  25430982 tttttttaatacaatatgcaataatagaagattaaacaagt 25430942  T

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Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 487 - 594
Target Start/End: Original strand, 17623420 - 17623527
Alignment:
Q  487 tttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagag 586  Q
    |||||||| ||||| ||||||||   ||| | ||||||| |||||||||||||||||||||||||||||||||||||| ||| || || |||||||||||    
T  17623420 tttccactgcagcagctcaattctggttgttattatacttctaatatagtatataaggaaactttgggggataccatgacacatgtctgcccccaaagag 17623519  T
Q  587 atccgccc 594  Q
    ||||||||    
T  17623520 atccgccc 17623527  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 32532836 - 32532765
Alignment:
Q  334 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 405  Q
    |||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32532836 ttaattcaagctcctctcaactcttggcatgtttatgcaactatcattagaaatatcaatgatctccttaat 32532765  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 571
Target Start/End: Original strand, 14735690 - 14735782
Alignment:
Q  479 gtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctg 571  Q
    ||||||| ||||||| ||| ||||  ||||| ||||||| | |||| |||||||||||||||||| ||| | ||||| || ||||||| ||||    
T  14735690 gtaccccatttccacaacaacaaccaaattctaattgatataatacacctaatatagtatataagaaaaatctggggaatgccatggcccctg 14735782  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 579
Target Start/End: Complemental strand, 5887939 - 5887872
Alignment:
Q  512 attgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 579  Q
    |||||| |||||| |||||| |||||||||||| || | |||||||| ||||||||||| ||| ||||    
T  5887939 attgatattatacacctaatgtagtatataagggaaatctgggggatgccatggcacctacctgcccc 5887872  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 512 - 574
Target Start/End: Original strand, 17303255 - 17303317
Alignment:
Q  512 attgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcct 574  Q
    |||||| |||||| ||||||||||||||||||| || | |||||||| ||||  |||||||||    
T  17303255 attgatattatacacctaatatagtatataagggaaatctgggggatgccataacacctgcct 17303317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 12288020 - 12287972
Alignment:
Q  357 ttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 405  Q
    ||||||||||||||| ||||||||||||||| |  | ||||||||||||    
T  12288020 ttggcatgtttatgccactatcattagaaatgttgaagatctccttaat 12287972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 519 - 594
Target Start/End: Original strand, 13564708 - 13564783
Alignment:
Q  519 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 594  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||    
T  13564708 ttatactcttaatatagtatataaggaaactttggaggataccatggcacctaccgtcccccaaagagatccgccc 13564783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 405 - 442
Target Start/End: Original strand, 13564588 - 13564625
Alignment:
Q  405 ttttttaaatacgatatgcaataatagaagattaaaca 442  Q
    |||||||||||| |||||||||||||||||||||||||    
T  13564588 ttttttaaatacaatatgcaataatagaagattaaaca 13564625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 469 - 574
Target Start/End: Complemental strand, 26494525 - 26494421
Alignment:
Q  469 ccagttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcac 568  Q
    ||||||||||| ||||| || ||||| || ||||| ||||   |||||  |||||| ||||||||||||||||||| || | ||||||||  ||||||||    
T  26494525 ccagttcatggcacccc-ttaccactgcaacaactaaattattattgaaattatacacctaatatagtatataagggaaatctgggggatgtcatggcac 26494427  T
Q  569 ctgcct 574  Q
    ||||||    
T  26494426 ctgcct 26494421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 572
Target Start/End: Complemental strand, 31523134 - 31523046
Alignment:
Q  484 ccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 572  Q
    ||||| ||||| ||| | || ||||| | ||| ||| |||| ||||||| | ||||||||||||||||||||||| ||||| |||||||    
T  31523134 cccttaccactgcagtagctgaattctagttgttgtaatacacctaatacaatatataaggaaactttgggggatgccatgacacctgc 31523046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 480 - 546
Target Start/End: Original strand, 46852108 - 46852174
Alignment:
Q  480 taccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaa 546  Q
    |||| |||||||||| |||||||| ||||| ||||| | | |||| ||||||||| |||||||||||    
T  46852108 taccgcctttccactgcagcaactgaattctaattgttataatacacctaatataatatataaggaa 46852174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 579
Target Start/End: Complemental strand, 29096168 - 29096115
Alignment:
Q  526 cctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 579  Q
    |||||||||||| |||||| || | |||||||| ||||||||||||||| ||||    
T  29096168 cctaatatagtaaataagggaaatctgggggatgccatggcacctgcctgcccc 29096115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 4870288 - 4870217
Alignment:
Q  334 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 405  Q
    |||||||||| ||||||||||  ||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  4870288 ttaattcaagctcctctcaatgcttgacatgtttatgcaactatcattagaaatatcaacaatctccttaat 4870217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 3632018 - 3631947
Alignment:
Q  334 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 405  Q
    ||||||||||  |||||||||  ||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  3632018 ttaattcaagcccctctcaatgtttgacatgtttatgcaactatcattagaaacatcaacgatctccttaat 3631947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 579
Target Start/End: Original strand, 15974121 - 15974216
Alignment:
Q  484 ccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 579  Q
    ||||| |||||||| ||||| ||||   |||||  | |||| |||||||||||||||||||||| | | |||||| ||||||||||||||| ||||    
T  15974121 cccttaccactacaacaactaaattgttattgaaatcatacacctaatatagtatataaggaaaatctaggggatgccatggcacctgcctgcccc 15974216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 405
Target Start/End: Complemental strand, 13106177 - 13106135
Alignment:
Q  363 tgtttatgcaactatcattagaaatatcaacgatctccttaat 405  Q
    ||||||||||| ||||||||||||||| |||||||||||||||    
T  13106177 tgtttatgcaattatcattagaaatattaacgatctccttaat 13106135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 579
Target Start/End: Original strand, 18768380 - 18768440
Alignment:
Q  519 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 579  Q
    |||||| ||||||||||||||||||| ||   |||||||| ||||||||||||||| ||||    
T  18768380 ttatacacctaatatagtatataagggaaacctgggggatgccatggcacctgcctgcccc 18768440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 2977233 - 2977304
Alignment:
Q  334 ttaattcaaggtcctctcaattgttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 405  Q
    |||||||||| ||||||||||  ||||||| ||||||| |||||| | | |||| |||| ||||||||||||    
T  2977233 ttaattcaagttcctctcaatgcttggcatttttatgccactatcgtaaaaaatgtcaaggatctccttaat 2977304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 363 - 405
Target Start/End: Complemental strand, 13036187 - 13036145
Alignment:
Q  363 tgtttatgcaactatcattagaaatatcaacgatctccttaat 405  Q
    ||||||| |||||||||||| |||||| |||||||||||||||    
T  13036187 tgtttatacaactatcattaaaaatattaacgatctccttaat 13036145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 519 - 593
Target Start/End: Complemental strand, 35735 - 35661
Alignment:
Q  519 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 593  Q
    |||||| ||||||||||||||||||| || | |||||||| ||||||||| || || ||||  || |||||||||    
T  35735 ttatacacctaatatagtatataagggaaatctgggggatgccatggcacttggctgccccttaaaagatccgcc 35661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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