View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4706-Insertion-5 (Length: 545)
Name: NF4706-Insertion-5
Description: NF4706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4706-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 8 - 541
Target Start/End: Original strand, 18194456 - 18194988
Alignment:
| Q |
8 |
ctattgatattgcttcatcagttctatatctactctgtagtagtaatattgtagtttccaaaagcttatgacatttatttcagttggaactgcaatatgg |
107 |
Q |
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| T |
18194456 |
ctattgctattgcttcatcagttctatatctactctgtagtagtaatattgtagtttccaaaagcttatgacatttatttcagttggaactgcaatatgg |
18194555 |
T |
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| Q |
108 |
taatggagtatgcatcatctactatttgttattctctgaagaatttatctttttgagtggtaaagtatgggaccctacctccatgttatattttttcaaa |
207 |
Q |
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| T |
18194556 |
taatggagtatgcatcatctactatttgttatgctctgaagaatttatctttttgagtggtaaagtatgggaccctacctccatgttatattttttcaaa |
18194655 |
T |
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| Q |
208 |
tcaaaccacatggtcaccacctcaaagcacaaacagcaagaagcggaatcaatgccattcctttttgaaaaatttcaacgtctcttaaaataattgggaa |
307 |
Q |
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| T |
18194656 |
tcaaaccacatggtcaccacctcaaagcacaaacagcaagaagcggaatcaatgccattcctttttgaaaaatttcaacgtctcttaaaataattgggaa |
18194755 |
T |
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| Q |
308 |
gttgttatgattaatccaaggttgagttgagaaattctgatttgacacatacaaaaattatggaggacaagccttgcaccgatgttgccaatccccctgc |
407 |
Q |
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| T |
18194756 |
gttgttatgattaatccaaggttgagccgagaaattctgatttgacacatacaaaaattatggaggacaagccttgcaccgacgttgccaatgcccctgc |
18194855 |
T |
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| Q |
408 |
attccgaaagaggatcttcatcacaaggaggtggatgatccacagtttgatgcaggttcggtaatgatcagcatcctttcgtgccacttcccgtgttttt |
507 |
Q |
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| T |
18194856 |
attccgaaagagga-cttcatcacaaggaggtggatgatccacagtttgatgcaggttcggtaatgatcagcatcctttcgtgtcacttcccgtgttttt |
18194954 |
T |
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| Q |
508 |
acttatgtgctttggatctgccctatataaaatc |
541 |
Q |
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| T |
18194955 |
acttatgtgctttggatctgccctatataaaatc |
18194988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 354 - 527
Target Start/End: Original strand, 18189495 - 18189670
Alignment:
| Q |
354 |
acatacaaaaattatggaggacaagccttgcaccgatgttgccaatccccct-gcattccgaaagaggatcttcatcacaaggaggtggatgatccacag |
452 |
Q |
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| T |
18189495 |
acatacaaaaattatggaggacaagccttgcgtcaacgttgccaatcaccctagcattccaaaagagaatcttcagcacaaggaggtggatgatccgc-c |
18189593 |
T |
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| Q |
453 |
tttgatgcaggttcggtaatgatcagcatccttt-cgtgccacttcccgtgttttt-acttatgtgctttggatctg |
527 |
Q |
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| T |
18189594 |
cttgttgcgggttctgtaatgctcagcatcctttacatgccactaccgttgtttttctcttatgtgctttgaatctg |
18189670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 18189233 - 18189319
Alignment:
| Q |
10 |
attgatattgcttcatcagttctatatctactctg---tagtagtaatattgtagtttccaaaagcttatgacatttatttcagttgg |
94 |
Q |
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| T |
18189233 |
attgctattgcttcttcagttct-taactactctgcagtagtagtaatattgttggttccaaaagattatgacatttatttcagttgg |
18189319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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