View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4706-Insertion-9 (Length: 246)
Name: NF4706-Insertion-9
Description: NF4706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4706-Insertion-9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 7497766 - 7497999
Alignment:
| Q |
7 |
aaaaggaacaataaaaatcaatattattttgcaataattggtgaattattgtgttcaatggggattcaaaaaatttgtttgcatcattactattttccaa |
106 |
Q |
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| T |
7497766 |
aaaaggaacaataaaaatcaatattatt---caataattggtgaattattgtgttcaatggggattcaaaaaatttgtttgcatcattactattttccaa |
7497862 |
T |
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| Q |
107 |
tatttt-attaatgtctacaaggagaccctcgacactttgcttatggcttacactgaaacacccaattcttaatagtcttcttgacatgtattctctcct |
205 |
Q |
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| T |
7497863 |
tatttttattaatgtctataaggagaccctcgacactttgcttatggcttacactgaaacacccaattctcaatagtcttcttgacatgtattctctcct |
7497962 |
T |
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| Q |
206 |
tagtatctacatatatcttgctcaatttcgcctcatgataa |
246 |
Q |
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| T |
7497963 |
tagtatc----tatatcttgctcaatttcgcctcatgataa |
7497999 |
T |
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Back To:
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Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 37685969 - 37685784
Alignment:
| Q |
7 |
aaaaggaacaataaaaatcaatattattttgcaataattggtgaattattgtgttcaatggggattcaaaaaatttgtttgcatcattactattttccaa |
106 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37685969 |
aaaaggaacaataaaaatcaatattattttccaataattggtgaattattgtgttcaatggggattcaaaaaatttgtttgcatcattactattttccaa |
37685870 |
T |
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| Q |
107 |
tattttattaatgtctacaaggagaccctcgacactttgcttatggcttacactgaaacacccaattcttaatagtcttcttgaca |
192 |
Q |
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| T |
37685869 |
tattttattaatgtctacaaggagaccctcgacactttgcttatggcttacactgaaacacccaattcttaatagttttcttgaca |
37685784 |
T |
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