View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4706_low_1 (Length: 723)
Name: NF4706_low_1
Description: NF4706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4706_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 637; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 1 - 718
Target Start/End: Original strand, 41776476 - 41777209
Alignment:
| Q |
1 |
aaaccatgatgtcgcgttctaagtcatgcgatcaaggaccttttttaaaagaatactagcttattaccatgcatgtttttctttctgtttcagtttccta |
100 |
Q |
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| T |
41776476 |
aaaccatgatgtcgcgttctaagtcgtgcgatcaaggaccttttttaaaagaatactagcttattaccatgcatgtatttctttctgtttcagtttccta |
41776575 |
T |
|
| Q |
101 |
ttgcactagtggtattttggtatgaagcaatgaaattgtacaaggattacaagaagaggatgaatacaggaaacctggaatgtatatgtgaagcttcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41776576 |
ttgcactagtggtattttggtatgaagcaatgaaattgtacaaggattacaagaagaggatgaatacaggaaacctggaatgtatatgtgaagcttcaat |
41776675 |
T |
|
| Q |
201 |
tgaatggactgtgttgcacattgtgttttgtgcgctctgtggaatcttaggtgggaccgttggagggctacttggttctggaggtggattcattctgggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41776676 |
tgaatggactgtgttgcacattgtgttttgtgcgctctgtggaatcttaggtgggaccgttggagggctacttggttctggaggtggattcattctgggc |
41776775 |
T |
|
| Q |
301 |
cctcttctcattgagatcggtgtcatccctcaggtacagtacatatagacataccctttcacatgcggattggattttgtg----------------cag |
384 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
41776776 |
cctcttctcattgagatcggtgtcatccctcaagtacagtatatatagacataccctttcacatgtggattggattttgtgcagtcacagtcccatacag |
41776875 |
T |
|
| Q |
385 |
tcacgcacctatctacatcggtggccattgaatcaagaatggacgtcaagcttggtattttatctggactgttcgatcttaaccaattgccactgatgtg |
484 |
Q |
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| T |
41776876 |
tcacgcacctagctacattggtggccattgaatcaagaatggacgtcaagcttggtattttatctggactgttcgatcttaaccaattgccaccaatgtg |
41776975 |
T |
|
| Q |
485 |
gctgactgcgtgactgcattagattatgcctacacacaacccaaatctgtttcccaaatcccttcacatgcatgacacagtttgattttaagctaaaaac |
584 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41776976 |
gctgactgcgtgactgcattagattatgcctacacacaacccaaatctgtttcccaaatcccttcacatgcatgacacagtttgattttaagctaaaaac |
41777075 |
T |
|
| Q |
585 |
ttaagcaatttaacttacaaggattttgattgcaggttgctagtgcaacagcgacatttgtgatgatgttttcatcatcattgtctgtggttgaattcta |
684 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41777076 |
ttaagcaatttaacttacaaggattttgattgcaggttgctagtgcaacagcgacatttgtgatgatgttttcatcatcattgtctgtggttgaattcta |
41777175 |
T |
|
| Q |
685 |
cctgctcaagaggttccccattccctatgctact |
718 |
Q |
| |
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||| ||||||||||||||||||||||||| |||| |
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| T |
41777176 |
cctactcaagaggttccccattccctatggtact |
41777209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 523
Target Start/End: Original strand, 41308303 - 41308348
Alignment:
| Q |
478 |
tgatgtggctgactgcgtgactgcattagattatgcctacacacaa |
523 |
Q |
| |
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|||||||||||||||||||||||||| ||||| || ||||| |||| |
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| T |
41308303 |
tgatgtggctgactgcgtgactgcatcagattgtgactacatacaa |
41308348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 613 - 702
Target Start/End: Complemental strand, 26957042 - 26956953
Alignment:
| Q |
613 |
attgcaggttgctagtgcaacagcgacatttgtgatgatgttttcatcatcattgtctgtggttgaattctacctgctcaagaggttccc |
702 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |||||| | |||||||||||||| |
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| T |
26957042 |
attgtaggttgctagtgcaacagcaacatttgtgatgatgttttcatcatctttgtctgtttttgagttctacattctcaagaggttccc |
26956953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 26957584 - 26957512
Alignment:
| Q |
259 |
gttggagggctacttggttctggaggtggattcattctgggccctcttctcattgagatcggtgtcatccctc |
331 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||| |||| ||||||||| ||||||| ||||||||||||| |
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| T |
26957584 |
gttggaggcttacttggttctggaggtggatttattttggggcctcttctccttgagataggtgtcatccctc |
26957512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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