View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4706_low_3 (Length: 250)
Name: NF4706_low_3
Description: NF4706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4706_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 41074667 - 41074427
Alignment:
| Q |
11 |
cacagacactcacacatacagacatggaattcactcgcccaagctagctagctagcaatagcatggtttt-attgaattagaaatactagttatgataag |
109 |
Q |
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| T |
41074667 |
cacagacactcacacatacagacatggaattcactcgcccaagctagctagctagcaatagtatggtttttattgaattagaaatactagttatgataag |
41074568 |
T |
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| Q |
110 |
ttctatgcatatgaatgcacaaatcgatcaaacaaaatcaaatgacttaaaagcttgcaatattgtctgagatagttgtttttgttgtgtccaagtttga |
209 |
Q |
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| T |
41074567 |
ttctatgcatatgaatgcacaaatcgatcaaaccaaatcaaatgacttaaaagcttgcaatattgtctgagatagttgtttttgttgtggccaagtttga |
41074468 |
T |
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| Q |
210 |
cttgaaagaccaagagtggatgtattgtcgttgacggactt |
250 |
Q |
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| T |
41074467 |
cttgaaagaccatgaatggatgtattgtagttgacggactt |
41074427 |
T |
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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 41089623 - 41089538
Alignment:
| Q |
136 |
atcaaacaaaatcaaatgacttaaaagcttgcaatattgtctgagatagttgtttttgttgtgtccaagtttgacttgaaagacca |
221 |
Q |
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| T |
41089623 |
atcaaaccaaatcagatgacttaaaagctagcaatattgtctgaggtggtcgttgttgttgtgtccaagtttgatttgaaagacca |
41089538 |
T |
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