View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4706_low_4 (Length: 250)
Name: NF4706_low_4
Description: NF4706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4706_low_4 |
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| [»] scaffold0214 (1 HSPs) |
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| [»] scaffold0164 (1 HSPs) |
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| [»] scaffold0760 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34230961 - 34230726
Alignment:
| Q |
1 |
aaaatagccattacatttgtgccactcgtgccacatgttctatttaaggatgnnnnnnnnacaagcctatttaaggatgtttgagatgcggttgatcaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
34230961 |
aaaatagccattacatttgtgccactcgtgccacatgttctatttaaggatgttttttttacaagcctatttaaggatgtttgagaggcggttgatcaat |
34230862 |
T |
|
| Q |
101 |
tttaaggcnnnnnnnnccgttcaatccaaagatataatgacatgcgcgcgattcagttttgatgactcgtttatactaaataaagaaactatttttattt |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34230861 |
tttaaggcaaaaaaaaccgttcaatccaaagatataatgacatgcgcgcgattcagttttgatgactcgtttatactaaataaagaaactatttttattt |
34230762 |
T |
|
| Q |
201 |
caagaaaaattgtttactaaacatgaatttgagccc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
34230761 |
caagaaaaattgtttactaaacatgaatttgagccc |
34230726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 34226829 - 34226598
Alignment:
| Q |
5 |
tagccattacatttgtgccactcgtgccacatgttctatttaaggatgnnnnnnnnacaagcctatttaaggatgtttgagatgcggttgatcaatttta |
104 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||| |
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| T |
34226829 |
tagccattacatttgtgccactcgtgccacttgttctatttaaggatgttttttt-acaagcccatttgaggatgtttgagatgtggttgatcaatttta |
34226731 |
T |
|
| Q |
105 |
aggcnnnnnnnnccgttcaatccaaagatataatgacatgcgcgcgattcagttttgatgactcgtttatact-aaataaagaaactatttttatttcaa |
203 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
34226730 |
aggcaaaaaaaaccgttcaatccaaagatatagtgacatgcgcgcgattcagttttgatgactcgtttatactaaaaaaaagaaactatttttatttcaa |
34226631 |
T |
|
| Q |
204 |
gaaaaattgtttactaaacatgaatttgagccc |
236 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
34226630 |
gaaaaattgtttacgaaacatgaatttgagccc |
34226598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 16877669 - 16877610
Alignment:
| Q |
177 |
taaataaagaaactatttttatttcaagaaaaattgtttactaaacatgaatttgagccc |
236 |
Q |
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| T |
16877669 |
taaataaggaaactatttttacctcaagaaaaattgtttactaaacatgaatttgagccc |
16877610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 34199737 - 34199645
Alignment:
| Q |
63 |
aagcctatttaaggatgtttgagatgcggttgatcaattttaaggc-nnnnnnnnccgttcaatccaaagatataatgacatgcgcgcgattc |
154 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |
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| T |
34199737 |
aagcctatttacagatgtttgagatgcggttgatcaattttaagacaaaaaaaaaccgttcaatccaaagatataattacatgcgcgcgattc |
34199645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 30170 - 30091
Alignment:
| Q |
157 |
ttttgatgactcgtttatactaaataaagaaactatttttatttcaagaaaaattgtttactaaacatgaatttgagccc |
236 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30170 |
ttttgatgtctcgtttatactaaataaagaaactatttttatttcaagaaaaattgtttactaaacatgaatttgagccc |
30091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 174
Target Start/End: Original strand, 34119 - 34286
Alignment:
| Q |
10 |
attacatttgtgccactcgtgccacatgttctatttaaggatgnnnnnnnn-acaagcctatttaaggatgtttgagatgcggttgatcaattttaaggc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |||||||||||||||||| ||||||||||||| | | |
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| T |
34119 |
attacatttgtgccactcgtgccacatgttctatttaag-atgttttttattataagcctattcaaggatgtttgagatgcgattgatcaattttatgac |
34217 |
T |
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| Q |
109 |
nnnnnnnnc---cgttcaatccaaagatataatgacatgcgcgcgattcagttttgatgactcgtttat |
174 |
Q |
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|||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| |
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| T |
34218 |
aaaaaaaaaaaacgttcaatgcaaagatataatggcatgcgcgcgattcggttttgatgtctcgtttat |
34286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0760 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 287 - 322
Alignment:
| Q |
174 |
tactaaataaagaaactatttttatttcaagaaaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
287 |
tactaaataaagaaactatttttatttcaagaaaaa |
322 |
T |
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