View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4706_low_5 (Length: 238)
Name: NF4706_low_5
Description: NF4706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4706_low_5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 18194460 - 18194240
Alignment:
| Q |
18 |
aatagcattctcctgatatttattctaaaacaaatcattggatttcagtcaaaaaatctcctttcctttgttatttatcgtgtgattcgtgtctcattta |
117 |
Q |
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| T |
18194460 |
aatagcattctcctgatatttattctaaaacaaatcattggatttcagtcaaaaaatctcctttcctttgttatttatcgtgtgattcgtgtctcattta |
18194361 |
T |
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| Q |
118 |
cagaatatgtacaacaaagatatttactaaacaaagtcatctggttctagaaagagaagaaaagcttagcagaaatcaactatattagcctatgatctat |
217 |
Q |
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| T |
18194360 |
cagaatatgtacaacaaagatatttactaaacaaagtcatctggttctagaaagagaagaaaagcttagcagaaatcaactatattagcctatgatctat |
18194261 |
T |
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| Q |
218 |
ttcagaaacactttgaaatct |
238 |
Q |
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| T |
18194260 |
ttcagaaacactttgaaatct |
18194240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 18189225 - 18188999
Alignment:
| Q |
28 |
tcctgatatttattctaaaacaaatcattggatttcagtcaaaaaatctcctttcctttgt-tatttatcgtgtgat---tcgtgtctcatttacagaat |
123 |
Q |
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| T |
18189225 |
tcctgatatttattctaaaaaaaaacattggatttcagtccaaaaatctcctttcctttgtctattcatcttgttatttatcctgtctcatttacataat |
18189126 |
T |
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| Q |
124 |
atgtacaacaaagatatttactaaacaaagtcatctggttc----taga-aagagaagaaaag-------cttagcagaaatcaactatattagcctatg |
211 |
Q |
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| T |
18189125 |
atgtacaacaaagatatttactcaacaaagtcatctgattcagaataaagaagaaaagaaaagaatcttagttagcagaaagcaactatactagcgtatg |
18189026 |
T |
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| Q |
212 |
atctatttcagaaacactttgaaatct |
238 |
Q |
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| T |
18189025 |
atctatttcagaaacattttgaaatct |
18188999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 18198977 - 18198925
Alignment:
| Q |
107 |
tgtctcatttacagaatatgtacaacaaagatatttactaaacaaagtcatct |
159 |
Q |
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| T |
18198977 |
tgtctcatttacataatatgtgcatcaaagatatttactcaacaaagttatct |
18198925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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