View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4706_low_6 (Length: 238)
Name: NF4706_low_6
Description: NF4706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4706_low_6 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 34231162 - 34231063
Alignment:
| Q |
139 |
aacaaatacgtcaaccttctcaacttttttataacgtacttaaactattttattattttaatgacatatttcgatcttattttgcggtccattcccaatc |
238 |
Q |
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| T |
34231162 |
aacaaatacgttaaccttctcaacttttttataacgtacttaaactattttattattttaatgacatattttgatcttattttgcggtccattcccaatc |
34231063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 34227116 - 34226979
Alignment:
| Q |
18 |
ggttgaaagtttgaggtggtttttattcaattgttttattcatttaaattatttt--------gagtttcagagacaaagatgtaagcatgatggcaatg |
109 |
Q |
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| T |
34227116 |
ggttgaaagtttgaggtggtttttattcaattgtttcattcatttaaattattttattattttgggttttagagaaaaagatgtaagcatgatggcaatg |
34227017 |
T |
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| Q |
110 |
aaagctaaacaaacgattttgcgatctttaacaaatac |
147 |
Q |
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| T |
34227016 |
aaagttaaacaaacgattttgcggtctttaccaaatac |
34226979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 34226978 - 34226935
Alignment:
| Q |
195 |
tttaatgacatatttcgatcttattttgcggtccattcccaatc |
238 |
Q |
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| T |
34226978 |
tttaatgatatattttgatcttattttgcgatccattcccaatc |
34226935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 220
Target Start/End: Complemental strand, 5986616 - 5986459
Alignment:
| Q |
65 |
attattttgagtttcagagacaaagatgtaagcatgatggcaatgaaagctaaacaaacgattttgcgatctttaacaaatacgtcaaccttctcaact- |
163 |
Q |
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| T |
5986616 |
attattttgggttttagagataaagaggtaatcacgatggaaatgaaagttgaacaaatgattttgcggtctttaccaaatactccaaccttttcgacta |
5986517 |
T |
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| Q |
164 |
tttttataacgt-acttaaactattttattattttaatgacatatttcgatcttattt |
220 |
Q |
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| T |
5986516 |
tttttataacattacttaaactatttaactattttaatgacatcttttgatcctattt |
5986459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 33929 - 34002
Alignment:
| Q |
165 |
ttttataacgtacttaaactattttattattttaatgacatatttcgatcttattttgcggtccattcccaatc |
238 |
Q |
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| T |
33929 |
ttttataacttacttaaactattttattattttattgacatcttttaatcatattttgcggtccattcccaatc |
34002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 218
Target Start/End: Complemental strand, 27878813 - 27878659
Alignment:
| Q |
65 |
attattttgagtttcagagacaaagatgtaagcatgatggcaatgaaagctaaacaaacgattttgcgatctttaacaaatacgtcaaccttctcaact- |
163 |
Q |
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| T |
27878813 |
attattttgggtttcagagataaagaggtaatcacgatggaaacgaa-gttgaacaaatgattttgcggtctttaccaaatgcgccaaccttttcgacta |
27878715 |
T |
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| Q |
164 |
tttttataacgt-acttaaactattttattattttaatgacatatttcgatcttat |
218 |
Q |
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| T |
27878714 |
tttttataacattacttaaactatttaactatattaatgacatcttttgatcttat |
27878659 |
T |
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