View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4707-Insertion-1 (Length: 915)
Name: NF4707-Insertion-1
Description: NF4707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4707-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 554; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 218 - 913
Target Start/End: Complemental strand, 36397872 - 36397192
Alignment:
| Q |
218 |
caccctattaaagatgtttatattgaactacatacaacctataaactggtactcccttcccttgacatagctcaagtgccaactattattcctttattca |
317 |
Q |
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| T |
36397872 |
cacccaattaaagatgtttatattgaactacatacaacctataaactggtactcccttcccttgacatagctcaagtgccaactattattcctt------ |
36397779 |
T |
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| Q |
318 |
agatggtatgtatctaggaggaaagtaatgatgttttccagattcaaagtgttgtttgtcgaaaaattcaaacatata-agtgtatggcactagttgaag |
416 |
Q |
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| T |
36397778 |
---------gtatctaggaggaaagtaatgatgttttccagattcaaagtgttgtttgtcgaaaaattcaaacatatatagtgtatgtcactagttgaag |
36397688 |
T |
|
| Q |
417 |
gattgtacttgtttcggtactagacaagtatgattgatgccagtgtaatcacggtaccaatattattgcaacggcagtgttatacatcaggagacttttc |
516 |
Q |
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| T |
36397687 |
gattgtacttgtttcggtactagacaagtatggttgatgccagtgtaatcacggtaccaatattattgcaacggcagtgttatacagcaggagagttttc |
36397588 |
T |
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| Q |
517 |
atagtgaattgcattatgaattaatcgttgttgaccaatacactcacgctcttattgaaaaacaccgtggttatgggatataattgtgatcaaactttca |
616 |
Q |
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| T |
36397587 |
atagtgaattgcattatgaattaatcgttgttgaccaatacactcacgctcttattgaaaaacaccgtggttatgggatgtaattgtgatcaaactttca |
36397488 |
T |
|
| Q |
617 |
ccatgtaacgataaaaagcctacgtgatcacgtagtgaattttgttttcgttatctaaaacattaccattgttgtataaaccccaaaaatatcttga--c |
714 |
Q |
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| T |
36397487 |
ccatgtaacgataaaaagcctacgtgatcacgtcgtgaattttgttttcgttatcttaaacattaccattgttgtataaaccccaaaaatatcttgactc |
36397388 |
T |
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| Q |
715 |
tgtgattgcaattgattgcggacatcaatttaaaacataagcattctttatattgaatgtagtgtgacttgtaaaggacaaaaataggaattataaacac |
814 |
Q |
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| T |
36397387 |
tgtgattgcaattgattgcggacatgaatttaaaacataagcattctttatattgaatgtagtgtgacttgtaaaggacaaaaata-gaattataaacac |
36397289 |
T |
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| Q |
815 |
taaacagacaatctggattgtgtagtgaaaatctagcagaagaaacttatgccatgcccaattcatttaagaacaatcagtggctattctatttctgat |
913 |
Q |
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| T |
36397288 |
taaacagacaatttggattgtgtagtgaaaatctagcagaag-aacttatgccatg-ccaattcatttaagaacaatcaagtgctattctatttctgat |
36397192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 36397969 - 36397871
Alignment:
| Q |
36 |
tcaatgaattgcaaattaagcatattgctattcttcttttttattcaattaatctcaagttttggatcagtataaacaaccaccatttaagtaaaaaca |
134 |
Q |
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| T |
36397969 |
tcaatgaattgcaaattaagcatattgctattcttcttttttagtcaattaatctcaagttttggatcagtataaacaaccaccatttaagtaaaaaca |
36397871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 36398043 - 36398012
Alignment:
| Q |
8 |
tttacttgatgcaatgatgcctatatattcaa |
39 |
Q |
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| T |
36398043 |
tttacttgatgcaatgatgcctatatattcaa |
36398012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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