View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4707-Insertion-3 (Length: 449)
Name: NF4707-Insertion-3
Description: NF4707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4707-Insertion-3 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 202 - 449
Target Start/End: Original strand, 258058 - 258305
Alignment:
| Q |
202 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgtagtctcagtcccaaacaaaagatgatgattctgttcagcatgtggaattt |
301 |
Q |
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| T |
258058 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgcagtctcagtcccaaacaaaagatgatgattctgttcagcatgtggaattt |
258157 |
T |
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| Q |
302 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
258158 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
258257 |
T |
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| Q |
402 |
taatttgtagcacagcattgttaaatgttatgtaaagacttgttgcca |
449 |
Q |
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| T |
258258 |
taatttgtagcacagcattattaaatgttatgtaaagacttgttgcca |
258305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 202 - 449
Target Start/End: Complemental strand, 657863 - 657616
Alignment:
| Q |
202 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgtagtctcagtcccaaacaaaagatgatgattctgttcagcatgtggaattt |
301 |
Q |
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| T |
657863 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgcagtctcagtcccaaacaaaagatgatgattctgttcagcatgtggaattt |
657764 |
T |
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| Q |
302 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
401 |
Q |
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| T |
657763 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
657664 |
T |
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| Q |
402 |
taatttgtagcacagcattgttaaatgttatgtaaagacttgttgcca |
449 |
Q |
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| T |
657663 |
taatttgtagcacagcattattaaatgttatgtaaagacttgttgcca |
657616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 202 - 449
Target Start/End: Complemental strand, 843598 - 843351
Alignment:
| Q |
202 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgtagtctcagtcccaaacaaaagatgatgattctgttcagcatgtggaattt |
301 |
Q |
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| T |
843598 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgcagtctcagtcccaaacaaaagatgatgattctgttcagcatgtggaattt |
843499 |
T |
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| Q |
302 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
843498 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
843399 |
T |
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| Q |
402 |
taatttgtagcacagcattgttaaatgttatgtaaagacttgttgcca |
449 |
Q |
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| T |
843398 |
taatttgtagcacagcattattaaatgttatgtaaagacttgttgcca |
843351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 257073 - 257194
Alignment:
| Q |
8 |
taaaccatcattcatatgccgtgtgcgcgcgtgtgtatcaatatccatcattcatagggactgtatctgtagatagttaagttcaaagtttttacctgtt |
107 |
Q |
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| T |
257073 |
taaaccatcattcatatgccgtgtgcg----tgtgtatcaatatccatcat----agggactgtatctgtagatagttaagttcaaagtttttacctgtt |
257164 |
T |
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| Q |
108 |
tgaaaactagctatcatagtgctacaacaa |
137 |
Q |
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| T |
257165 |
tgaaaactagctatcatagtgctacaacaa |
257194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 658847 - 658726
Alignment:
| Q |
8 |
taaaccatcattcatatgccgtgtgcgcgcgtgtgtatcaatatccatcattcatagggactgtatctgtagatagttaagttcaaagtttttacctgtt |
107 |
Q |
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| T |
658847 |
taaaccatcattcatatgccgtgtgcg----tgtgtatcaatatccatcat----agggactgtatctgtagatagttaagttcaaagtttttacctgtt |
658756 |
T |
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| Q |
108 |
tgaaaactagctatcatagtgctacaacaa |
137 |
Q |
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| T |
658755 |
tgaaaactagctatcatagtgctacaacaa |
658726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 844583 - 844462
Alignment:
| Q |
8 |
taaaccatcattcatatgccgtgtgcgcgcgtgtgtatcaatatccatcattcatagggactgtatctgtagatagttaagttcaaagtttttacctgtt |
107 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
844583 |
taaaccatcattcatatgccgtgtgcg----tgtgtatcaatatccatcat----agggactgtatctgtagatagttaagttcaaagtttttacctgtt |
844492 |
T |
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| Q |
108 |
tgaaaactagctatcatagtgctacaacaa |
137 |
Q |
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| T |
844491 |
tgaaaactagctatcatagtgctacaacaa |
844462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 192
Target Start/End: Complemental strand, 257237 - 257203
Alignment:
| Q |
158 |
ttctcttagcctaattaatttgatgacccaataag |
192 |
Q |
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| T |
257237 |
ttctcttagcctaattaatgtgatgacccaataag |
257203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 192
Target Start/End: Original strand, 658683 - 658717
Alignment:
| Q |
158 |
ttctcttagcctaattaatttgatgacccaataag |
192 |
Q |
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||||||||||||||||||| ||||||||||||||| |
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| T |
658683 |
ttctcttagcctaattaatgtgatgacccaataag |
658717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 192
Target Start/End: Original strand, 844419 - 844453
Alignment:
| Q |
158 |
ttctcttagcctaattaatttgatgacccaataag |
192 |
Q |
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| T |
844419 |
ttctcttagcctaattaatgtgatgacccaataag |
844453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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