View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4707_high_13 (Length: 365)
Name: NF4707_high_13
Description: NF4707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4707_high_13 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 2 - 365
Target Start/End: Original strand, 47275044 - 47275407
Alignment:
| Q |
2 |
gtgcagcaccacagaccaaacagactgggacttcttctgagctgataggtcctcattgtccttcttcttccgaattacatgctgccatatggtctttagc |
101 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47275044 |
gtgcagctccacagaccaaacagactgggacttcttctgagctgataggtcctcattgtccttcttcttccgaattacatgctgccaaatggtctttagc |
47275143 |
T |
|
| Q |
102 |
tcctgtaatctcacaggtttcaccagaaaatcagaggcaccatggaaaactgccttcatcactagctcattatcgctagattcagacaacactgaaataa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47275144 |
tcctgtaatctcacaggtttcaccagaaaatcagaggcaccatggaaaactgccttcatcactagctcattatcgctagattcagacaacactgaaataa |
47275243 |
T |
|
| Q |
202 |
aacaacaaacgttcaccaaacaatcattgattaataattatatgaataaataagagtgaaaatgaagaaacaaagaaaagatgaagaactgaagattaca |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47275244 |
aacaacaaacgttcaccaaacaatcattgattaataattatatgaataaatgagagtgaaaatgaagaaacaaagcaaagatgaagaactgaagattaca |
47275343 |
T |
|
| Q |
302 |
gaacagatccccccacttacttacgacgaccggaaggtccgtctcaagttccacaagttcaagc |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47275344 |
gaacagatccccccacttacttacgacgaccggaaggtccgtctcaagttccacaagttcaagc |
47275407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 69 - 324
Target Start/End: Original strand, 47280796 - 47281047
Alignment:
| Q |
69 |
ttccgaattacatgctgccatatggtctttagctcctgtaatctcacaggtttcaccagaaaatcagaggcaccatggaaaactgccttcatcactagct |
168 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||||||| |||||||||||||||| |||||||||| |||||| ||| ||| |||||||||||| |||| |
|
|
| T |
47280796 |
ttccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacgggcaccgtgggaaattgccttcatcaccagct |
47280895 |
T |
|
| Q |
169 |
cattatcgctagattcagacaacactgaaataaaacaacaaacgttcaccaaacaatcattgattaataattatatgaataaataagagtgaaaatgaag |
268 |
Q |
| |
|
| | || | | | |||||||||||||||| |||||| | | || ||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
47280896 |
ccgtttcaccatgtgcagacaacactgaaatcaaacaattta---taac--aacaatcattgattaataattatataaataaatgagagtgaaaatgaag |
47280990 |
T |
|
| Q |
269 |
aaacaaagaaaagatgaagaactgaagattacagaacagatcccccc-acttactta |
324 |
Q |
| |
|
||||| | ||||||||||| ||||| |||| | ||||||||||||| ||||||||| |
|
|
| T |
47280991 |
aaacagaacaaagatgaagagctgaaaattataaaacagatccccccaacttactta |
47281047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 49060905 - 49061048
Alignment:
| Q |
62 |
cttcttcttccgaattacatgctgccatatggtctttagctcctgtaatctcacaggtttcaccagaaaatcagaggcaccatggaaaactgccttcatc |
161 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||| ||||| ||||||||||| ||| | | |||||| |
|
|
| T |
49060905 |
cttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtttcagcagataatcacaggcaccatgggaaattcctttcatc |
49061004 |
T |
|
| Q |
162 |
actagctcattatcgctagattcagacaacactgaaataaaaca |
205 |
Q |
| |
|
|| |||| |||| | | || |||||||||||||||| ||||| |
|
|
| T |
49061005 |
accagctttgtatcaccatatgcagacaacactgaaatcaaaca |
49061048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 49060677 - 49060736
Alignment:
| Q |
2 |
gtgcagcaccacagaccaaacagactgggacttcttctgagctgataggtcctcattgtc |
61 |
Q |
| |
|
||||||| |||||||||||||| | | | |||||||||||||||| ||||||||||||| |
|
|
| T |
49060677 |
gtgcagctccacagaccaaacaacccgaggcttcttctgagctgatgggtcctcattgtc |
49060736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University