View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4707_high_20 (Length: 338)
Name: NF4707_high_20
Description: NF4707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4707_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 28448134 - 28447982
Alignment:
| Q |
22 |
catcatcatcgatgtagaggggaggtctgtaggcctgacgcctatagaaatagacaaccactccaacaaaagattgaaggccgtaacctccaacgcacaa |
121 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28448134 |
catcatcatcgatgtagaggggaggtctgtaggtctgatgcctatagaaatagacaaccactccaacaaaagattgaaggccgtaacttccaacgcacaa |
28448035 |
T |
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| Q |
122 |
aataggaaccccagagagaggaacaccgaagccaaggccagccaaagctcaaa |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28448034 |
aataggaaccccagagagaggaacaccgaagccaaggccagccaaagcccaaa |
28447982 |
T |
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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 18690684 - 18690609
Alignment:
| Q |
94 |
attgaaggccgtaacctccaacgcacaaaataggaaccccagagagaggaacaccgaagccaaggccagccaaagc |
169 |
Q |
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|||||||| ||||| ||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
18690684 |
attgaaggttgtaacttccaacgcaaaaactaggaacctcagagagaggaacaccgaagccaaggccaaccaaagc |
18690609 |
T |
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