View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4707_high_22 (Length: 333)
Name: NF4707_high_22
Description: NF4707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4707_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 35618227 - 35617913
Alignment:
| Q |
14 |
atcatcagaagagaggtcttcagtttcagggagaagaatttcatcaaatgctttttgcacaagctcaattacattcttcttttcttcatccatatccgaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35618227 |
atcatcagaagagaggtcttcagtttcagggagaagaatttcatcaaatgctttttgcacaagctcaattacattcttcttttcttcatccatatccgaa |
35618128 |
T |
|
| Q |
114 |
tctgtttcattataattgtgacgagaagagttgtttcctccattaaacacggcatcaccttgctctctaccttctttgtccttcccaacaacgggaagct |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35618127 |
tctgtttcattataattgtgacaagaagagttgtttcctccattaaacacggcatcaccttgctctctaccttctttgtccttcccaacaacgggaagct |
35618028 |
T |
|
| Q |
214 |
tattatcacattttcctgtgttacttaatactgcttgcttatacatcaaatgccacttttttatatatttctgatctctttcctgcactccatatggcac |
313 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35618027 |
tattatcatattttcctgtgttacttaatactgcttgcttatacatcaaatgccacttttttatatatttctgatctctttcctgcactccatatggcac |
35617928 |
T |
|
| Q |
314 |
atcagtagtactagt |
328 |
Q |
| |
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||||||||||||||| |
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| T |
35617927 |
atcagtagtactagt |
35617913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 28437784 - 28438094
Alignment:
| Q |
14 |
atcatcagaagagaggtcttcagtttcagggagaagaatttcatcaaatgctttttgcacaagctcaattacattcttcttttcttcatccatatccgaa |
113 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
28437784 |
atcatcagaagagaggtcttcagcttcaggtagaagaatttcatcaaatgctttttccacgagctcaattacattcttcttttcatcatccatatccgaa |
28437883 |
T |
|
| Q |
114 |
tctgtttcattataattgtgacgagaagagttgtttcctccattaaacacggcatcaccttgctctctaccttctttgtccttcccaacaacgggaagct |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||| ||| |||| ||| |
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| T |
28437884 |
tctgtttcattataattgtgacaagaagagttgtttcctccattaaacgcgacatcgccttgctctctaccttctttgtccttcccagcaaagggatgct |
28437983 |
T |
|
| Q |
214 |
tattatcacattttcctgtgttacttaatactgcttgcttatacatc-aaatgccac---------ttttttatatatttctgatctctttcctgcactc |
303 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||||||||||||||||||||||||||||||| |
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| T |
28437984 |
tattatcacattttcctgtgttacttaatactgcatgcttatacatcaaaatgcaactttttttttttttttatatatttctgatctctttcctgcactc |
28438083 |
T |
|
| Q |
304 |
catatggcaca |
314 |
Q |
| |
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|||||| |||| |
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| T |
28438084 |
catatgccaca |
28438094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 35617176 - 35616883
Alignment:
| Q |
18 |
tcagaagagaggtcttcagtttcagggagaagaatttcatcaaatgctttttgcacaagctcaattacattcttcttttcttcatccatatccgaatctg |
117 |
Q |
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||||| || ||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
35617176 |
tcagaggaaaggtcttcaacttcagggagaagaatctcatcaaatgctttctgcacaagctcaattacattcttcttttcatcatccatatctgaatctg |
35617077 |
T |
|
| Q |
118 |
tttcattataattgtgacgagaagagttgtttcctccattaaacacggcatcaccttgctctctaccttctttgtccttcccaacaacgggaagcttatt |
217 |
Q |
| |
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||||| |||||||| ||| |||||||||||||| ||||| ||| ||||| ||||||||| ||||| | |||| |||| ||||| |
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| T |
35617076 |
tttcactataattg---cgataagagttgtttccttcattat------------cttcctctccaccttctttttccttttcgacaagaggaactttatt |
35616992 |
T |
|
| Q |
218 |
atcacattttcctgtgttacttaatactgcttgcttatacatcaaatgccacttttttatatatttctgatctctttcctgcactccatatggcacatca |
317 |
Q |
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||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| | |
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| T |
35616991 |
atcacattttcctgtattacttaatactgcatgtttatacatcaaatgccacttttttatatatttctgatctctttcttgcactccatatgccacacta |
35616892 |
T |
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