View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4707_high_23 (Length: 329)
Name: NF4707_high_23
Description: NF4707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4707_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 20086232 - 20085911
Alignment:
| Q |
1 |
cactcatttcatcacaaagttcagatctttgaattcattttctcnnnnnnntgagagacaaattttcatgttttagtgaaaattcaataaatgtctcaaa |
100 |
Q |
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| T |
20086232 |
cactcatttcaccacaaagttcagatctttgaattcattttctcaaaaaaatgagagacaaattttcatgttttagtgaaaattcaataaatgtctcaaa |
20086133 |
T |
|
| Q |
101 |
tgcttcatgttctagctattcaaacaacacatgcatttcaccaaacgttgtttcaccttcaatccaaaactcaatctcaagtgtttacaaattagtcctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20086132 |
tgcttcatgttctagctattcaaacaacacatgcatttcaccaaatgttgtttcaccttcaatccaaaactcaatctcaagtgtttacaaattagtcctt |
20086033 |
T |
|
| Q |
201 |
tcaacattgaaacaccttttgatcactgttacatggtgtaaaaatcactcaaatcaaggacttagcataagttttggtgatgaagatccttcaactgttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20086032 |
tcaacattgaaacaccttttgatcactgttacatggtgtaaaaatcactcaaatcaaggacttagcataagttttggtgatgaagatccttcaactgttc |
20085933 |
T |
|
| Q |
301 |
catctttcagactcaacacgaa |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
20085932 |
catctttcagactcaacacgaa |
20085911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 1021525 - 1021458
Alignment:
| Q |
145 |
acgttgtttcaccttcaatccaaaactcaatctcaagtgtttacaaattagtcctttcaacattgaaa |
212 |
Q |
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||||||||||||||||||| ||||||| ||| ||||||||||| ||||| ||||| |||||||||||| |
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| T |
1021525 |
acgttgtttcaccttcaattcaaaacttaatttcaagtgtttagaaattggtcctctcaacattgaaa |
1021458 |
T |
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