View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4707_high_25 (Length: 319)
Name: NF4707_high_25
Description: NF4707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4707_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 51405311 - 51405001
Alignment:
| Q |
1 |
aagacaatgtcattccaggtggagaaatgaacttaacaacatggagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatc |
100 |
Q |
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| T |
51405311 |
aagacaatgtcattccaggtggagaaatgaacttaacaacatggagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatc |
51405212 |
T |
|
| Q |
101 |
gtcgcgtcctccgaagaagattacagcaaccttaaaggaaacttcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaaca |
200 |
Q |
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| T |
51405211 |
gtcgcgtcctccgaagaagattacaacaaccttaaaggaaacttcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaaca |
51405112 |
T |
|
| Q |
201 |
gaacaaggtgcatgactcaacacgagctcattcattacatgaaatgaatgtcctaatgactccatcgttccatcgatacgctggtgtttatggaatggaa |
300 |
Q |
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| T |
51405111 |
gaacaaggtgcatgactcaacacaagctcattcattacatgaaatgaatgtcctaatgactccatcgttccatctatacgctggtgtttatggaatggaa |
51405012 |
T |
|
| Q |
301 |
ggagtattatc |
311 |
Q |
| |
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||||||||||| |
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| T |
51405011 |
ggagtattatc |
51405001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 274
Target Start/End: Original strand, 29981430 - 29981660
Alignment:
| Q |
44 |
gagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattacagcaaccttaaaggaaact |
143 |
Q |
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|||| ||||||| ||||||||||| ||||||||||| || ||||||||||| |||| || | |||||| ||||| |||| |||| || | ||||| |
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| T |
29981430 |
gagtgaaattccaggatgttctgctattctcataccgtacgcaagtgcttctcgatcatcacatcctccaaagaaagctacaacaacattgtaagaaaca |
29981529 |
T |
|
| Q |
144 |
tcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaacacgagctcattcattacatgaa |
243 |
Q |
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||||| || || |||||| |||| ||||| || || ||||||| |||||||||||| || ||||| ||||| || | || || |||||||||| ||| |
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| T |
29981530 |
tcactagcatggacttgagttgtccctccaaggccacgatcaaccaaaattccaaccgagcaaggagcatggctaagtacaagtccattcattacgcgaa |
29981629 |
T |
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| Q |
244 |
atgaatgtcctaatgactccatcgttccatc |
274 |
Q |
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| || || |||||||| ||||| |||||||| |
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| T |
29981630 |
acgagtgccctaatgattccatagttccatc |
29981660 |
T |
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