View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4707_high_27 (Length: 317)
Name: NF4707_high_27
Description: NF4707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4707_high_27 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 29851776 - 29851475
Alignment:
| Q |
16 |
ggacatcatcactatgatgatgatgacgatttgccagacggggtcttgccaaagcaacaagctaaaaagcggcatcctcactatgataatgacgaggatt |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29851776 |
ggacatcctcactatgatgatgatgacgatttgccagacggggtcttgccaaagcaacaagctaaaaagcggcatcctcactacgataatgacgaggatt |
29851677 |
T |
|
| Q |
116 |
cgctacatgaggacttaccaaagaatcatcaagctaaaaggggacgttctcactatgatgtcgaagacaatttgctagatggggttttaccaaagcaacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29851676 |
cgctacatgaggacttaccaaagaatcatcaagctaaaaggggacgttctcactatgatgtcgaagacaatttgttagatggggttttaccaaagcaacc |
29851577 |
T |
|
| Q |
216 |
tcaagctaaaaagcgacatccttactatgataatgatggggattcgttacatgaggacttaccaaagaatcatcaagctgaaagggggcagcctcgctat |
315 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29851576 |
tcaagctaaaaagcgtcatcctcactatgataatgatggggattcgttacatgaggacttaccaaagaatcatcaagctgaaagggggcagcctcgctat |
29851477 |
T |
|
| Q |
316 |
ga |
317 |
Q |
| |
|
|| |
|
|
| T |
29851476 |
ga |
29851475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 302
Target Start/End: Complemental strand, 29851627 - 29851346
Alignment:
| Q |
24 |
tcactatgatgatgatgacgatttgccagacggggtcttgccaaagcaac---aagctaaaaagcggcatcctcactatgataatgacgaggattcgcta |
120 |
Q |
| |
|
||||||||||| || ||| ||||| ||| ||||| || |||||||||| ||||||||||||| |||||||||||||||||||| | ||||||| || |
|
|
| T |
29851627 |
tcactatgatgtcgaagacaatttgttagatggggttttaccaaagcaacctcaagctaaaaagcgtcatcctcactatgataatgatggggattcgtta |
29851528 |
T |
|
| Q |
121 |
catgaggacttaccaaagaatcatcaagctaaaaggggacgttctcactatgatgtcgaagacaatttgctagatggggttttaccaaagcaacctcaag |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| | ||| |||||||| || ||| || ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
29851527 |
catgaggacttaccaaagaatcatcaagctgaaagggggcagcctcgctatgatgatgatgacgatctgccagatggggttttaccaaagcaacgtcaag |
29851428 |
T |
|
| Q |
221 |
ctaaaaagcgacatccttactatgataatgatggggattcgttacatgaggacttaccaaagaatcatcaagctgaaagggg |
302 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
29851427 |
ctaaaaagctacatcctcactatgataatgatgaggattcgctacatgaggacttaccaaagaatcatcaggctaaaagggg |
29851346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 27 - 175
Target Start/End: Complemental strand, 29851480 - 29851329
Alignment:
| Q |
27 |
ctatgatgatgatgacgatttgccagacggggtcttgccaaagcaac---aagctaaaaagcggcatcctcactatgataatgacgaggattcgctacat |
123 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| || |||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29851480 |
ctatgatgatgatgacgatctgccagatggggttttaccaaagcaacgtcaagctaaaaagctacatcctcactatgataatgatgaggattcgctacat |
29851381 |
T |
|
| Q |
124 |
gaggacttaccaaagaatcatcaagctaaaaggggacgttctcactatgatg |
175 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||| ||||||| |
|
|
| T |
29851380 |
gaggacttaccaaagaatcatcaggctaaaaggggacgtcctctttatgatg |
29851329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 122 - 302
Target Start/End: Complemental strand, 29851811 - 29851634
Alignment:
| Q |
122 |
atgaggacttaccaaagaatcatcaagctaaaaggggacgttctcactatgatgtcgaagacaatttgctagatggggttttaccaaagcaacctcaagc |
221 |
Q |
| |
|
|||||| |||||||||| | ||||| ||||||||||||| | |||||||||||| || ||| |||||| ||| ||||| || ||||||||| ||||| |
|
|
| T |
29851811 |
atgaggtcttaccaaagcaacatcatgctaaaaggggacatcctcactatgatgatgatgacgatttgccagacggggtcttgccaaagcaa---caagc |
29851715 |
T |
|
| Q |
222 |
taaaaagcgacatccttactatgataatgatggggattcgttacatgaggacttaccaaagaatcatcaagctgaaagggg |
302 |
Q |
| |
|
||||||||| |||||| |||| |||||||| | ||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29851714 |
taaaaagcggcatcctcactacgataatgacgaggattcgctacatgaggacttaccaaagaatcatcaagctaaaagggg |
29851634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 29851898 - 29851752
Alignment:
| Q |
104 |
atgacgaggattcgctacatgaggacttaccaaagaatcatcaagctaaaaggggacgttctcactatgatgtcgaagacaatttgctagatggggtttt |
203 |
Q |
| |
|
|||| |||||||| ||| |||||| ||||||||| | | ||||||||||||||| |||||||||||||| ||| ||| | | ||||||| ||| || |
|
|
| T |
29851898 |
atgatgaggattcactagatgaggttttaccaaagcaacgtcaagctaaaaggggtcgttctcactatga---cgacgacgactctctagatgaggtctt |
29851802 |
T |
|
| Q |
204 |
accaaagcaacctcaagctaaaaagcgacatccttactatgataatgatg |
253 |
Q |
| |
|
||||||||||| ||| ||||||| | |||||||| |||||||| |||||| |
|
|
| T |
29851801 |
accaaagcaacatcatgctaaaaggggacatcctcactatgatgatgatg |
29851752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University