View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4707_high_3 (Length: 413)
Name: NF4707_high_3
Description: NF4707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4707_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 30 - 387
Target Start/End: Original strand, 2606234 - 2606591
Alignment:
| Q |
30 |
ctaagtatgatcacttaagcattatacttcagtttcctacattccagcatccattcttacttgagggtcaaagcttaagaacctattatgccttctcatc |
129 |
Q |
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||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2606234 |
ctaagtatgatcacttacgcgttatacttcactttcctacattccagcatccattcttacttgagggtcaaagcttaagaacctattatgccttctcatc |
2606333 |
T |
|
| Q |
130 |
aatttatctattaaccttagggccgtcacgagaaggggtgcttatacacgcaataaagatctaaagaaactgcaataaaacctctatggagttgtaaact |
229 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2606334 |
aatttatctattaaccttagggccatcacgagaaggggtgcttatacacgcaataaagatctaaagaaactgcaataaaacctctatggagttgtaaact |
2606433 |
T |
|
| Q |
230 |
catagcttacctcagcaaaaaagagaaatcagatagaaaacccaatagagctttgagttaagctgaacactatgttgaatatattttaatacgttatcga |
329 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2606434 |
catagattacctcagcaaaaaagagagatcagatagaaaacccaatagagctttgagttaagctggacactatgttgaatatattttaatacgttatcga |
2606533 |
T |
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| Q |
330 |
catacgatactaaatttttaatattaacataacactaaatgattatggagcctcttga |
387 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2606534 |
catacgatactaaatttgtaatattaacataacactaaatgattatggagcctcttga |
2606591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 52 - 366
Target Start/End: Original strand, 2599877 - 2600186
Alignment:
| Q |
52 |
tatacttcagtttcctacattccagcatccattcttacttgagggtcaaagcttaagaacctattatgccttctcatcaatttatctattaaccttaggg |
151 |
Q |
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||||| ||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2599877 |
tatacatcacttttctacattccagcatcaattcttacttgagggtcaaagcttaagaacctattatgccttctcatcaatttatctattaaccttaggg |
2599976 |
T |
|
| Q |
152 |
ccgtcacgagaaggggtgcttatacacgcaataaagatctaaagaaactgcaataaaacctctatggagttgtaaactcatagcttacctcagcaaaaaa |
251 |
Q |
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|||||||| ||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| || |||| |
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| T |
2599977 |
ccgtcacg---aggggtgcttatacaggcaataaagatctatagcaactgcaataaaacctctatggagttgtaaactcatagtttacctcaacataaaa |
2600073 |
T |
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| Q |
252 |
gagaaatcagatagaaaacccaatagagctttgagttaagctgaacactatgttgaatatattttaatacgttatcgacatacgatactaaatttttaat |
351 |
Q |
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|| || |||||||||| ||||| |||||||||||||||| || | |||||||||||||||||||||||| ||||||||||||| ||||||||| || | |
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| T |
2600074 |
gataagtcagatagaagaccca--agagctttgagttaagttggatactatgttgaatatattttaatacattatcgacatacggtactaaattagtatt |
2600171 |
T |
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| Q |
352 |
attaacataacacta |
366 |
Q |
| |
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||||| ||||||||| |
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| T |
2600172 |
attaaaataacacta |
2600186 |
T |
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