View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4707_high_6 (Length: 392)
Name: NF4707_high_6
Description: NF4707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4707_high_6 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold1371 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 163 - 392
Target Start/End: Original strand, 34899746 - 34899975
Alignment:
| Q |
163 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaggatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
262 |
Q |
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| T |
34899746 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
34899845 |
T |
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| Q |
263 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
362 |
Q |
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| T |
34899846 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
34899945 |
T |
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| Q |
363 |
gtttggtagtttcaactttcaagttgagat |
392 |
Q |
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| T |
34899946 |
gtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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Target: scaffold1371 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1371
Description:
Target: scaffold1371; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 1590 - 1558
Alignment:
| Q |
30 |
atgacaaaatcctgcaaaagctgaactgccact |
62 |
Q |
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| T |
1590 |
atgacaaaatcctgcaaaagctgaactgccact |
1558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 9670725 - 9670757
Alignment:
| Q |
30 |
atgacaaaatcctgcaaaagctgaactgccact |
62 |
Q |
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| T |
9670725 |
atgacaaaatcctgcaaaagctgaactgccact |
9670757 |
T |
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