View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4708-Insertion-1 (Length: 961)

Name: NF4708-Insertion-1
Description: NF4708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4708-Insertion-1
NF4708-Insertion-1
[»] chr3 (16 HSPs)
chr3 (281-951)||(35096919-35097583)
chr3 (281-577)||(35110159-35110452)
chr3 (8-198)||(35096646-35096836)
chr3 (289-586)||(35102818-35103116)
chr3 (649-805)||(13234435-13234591)
chr3 (856-951)||(35110572-35110667)
chr3 (101-193)||(35109965-35110057)
chr3 (855-937)||(35103222-35103304)
chr3 (740-800)||(51830955-51831015)
chr3 (740-800)||(20551382-20551442)
chr3 (743-800)||(38441599-38441656)
chr3 (743-800)||(40811368-40811425)
chr3 (743-800)||(40816268-40816325)
chr3 (743-800)||(42344723-42344780)
chr3 (740-800)||(6117054-6117114)
chr3 (740-800)||(10266106-10266166)
[»] chr4 (6 HSPs)
chr4 (649-805)||(18302269-18302425)
chr4 (744-805)||(18032080-18032141)
chr4 (727-805)||(48851412-48851490)
chr4 (740-800)||(29323129-29323189)
chr4 (740-800)||(49626319-49626379)
chr4 (740-800)||(31068133-31068193)
[»] chr7 (11 HSPs)
chr7 (649-805)||(6944665-6944821)
chr7 (660-805)||(5268327-5268472)
chr7 (649-749)||(48942841-48942941)
chr7 (729-805)||(30129143-30129219)
chr7 (740-800)||(12173140-12173200)
chr7 (740-800)||(21908132-21908192)
chr7 (740-800)||(3223648-3223708)
chr7 (740-800)||(29104982-29105042)
chr7 (740-800)||(21981971-21982031)
chr7 (729-769)||(41932601-41932641)
chr7 (740-800)||(37080387-37080448)
[»] chr8 (9 HSPs)
chr8 (680-805)||(8768573-8768698)
chr8 (754-805)||(42913065-42913116)
chr8 (740-800)||(19392130-19392190)
chr8 (740-800)||(1553406-1553466)
chr8 (740-799)||(12318112-12318171)
chr8 (740-800)||(35466989-35467049)
chr8 (652-694)||(37241890-37241932)
chr8 (740-786)||(38458472-38458518)
chr8 (740-800)||(5685041-5685101)
[»] chr2 (8 HSPs)
chr2 (661-805)||(44511568-44511712)
chr2 (744-805)||(37874715-37874776)
chr2 (740-800)||(39164415-39164475)
chr2 (742-800)||(35833879-35833937)
chr2 (742-785)||(5156750-5156793)
chr2 (740-800)||(14709742-14709803)
chr2 (740-800)||(20912588-20912648)
chr2 (740-800)||(42632385-42632444)
[»] chr1 (9 HSPs)
chr1 (729-804)||(20015281-20015356)
chr1 (740-800)||(8263444-8263504)
chr1 (740-800)||(15232199-15232259)
chr1 (740-800)||(16291296-16291356)
chr1 (740-800)||(17202278-17202338)
chr1 (740-800)||(1823973-1824033)
chr1 (740-800)||(16028833-16028893)
chr1 (652-698)||(10986650-10986696)
chr1 (740-800)||(16279858-16279918)
[»] chr6 (7 HSPs)
chr6 (652-765)||(14174511-14174625)
chr6 (652-765)||(14179047-14179161)
chr6 (740-800)||(10130316-10130376)
chr6 (740-800)||(26241831-26241891)
chr6 (742-800)||(25312298-25312356)
chr6 (742-800)||(26199792-26199850)
chr6 (742-784)||(8483001-8483043)
[»] chr5 (4 HSPs)
chr5 (743-800)||(27426612-27426669)
chr5 (740-800)||(26719994-26720054)
chr5 (740-800)||(26989740-26989800)
chr5 (740-800)||(1949375-1949435)
[»] scaffold0017 (1 HSPs)
scaffold0017 (740-800)||(188899-188959)


Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 281 - 951
Target Start/End: Original strand, 35096919 - 35097583
Alignment:
Q  281 cttgttccgactctcgagtgagtccctctgttatcctcaactttcaacctggtgaagctttcttggttcgaaacattgctaacatggtccctccatttaa 380  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35096919 cttgttccgactctcgagtgagtccctctgttatcctgaactttcaacctggtgaagctttcatggttcgaaacattgctaacatggtccctccatttaa 35097018  T
Q  381 tcaggtctaattcactgtttttctaaacaaatgaattgctatatatgatatacacattattgaagaatttttaataattaactttctattccacagttac 480  Q
    ||||||||| |||||| |||||||||| ||||||||| |||||  ||||||||||||||||||||| |||||||||||||| |||||||||||||||||     
T  35097019 tcaggtctacttcactatttttctaaagaaatgaatttctata--tgatatacacattattgaagagtttttaataattaaatttctattccacagttaa 35097116  T
Q  481 gatacagtggagttggtgcaacccttgagtatgctattacagctctaaaggtaagtgattagcttctattcaaaagtgttttaaaatttgtttgtgattg 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35097117 gatacagtggagttggtgcaacccttgagtatgctattacagctctaaaggtaagtgatcagcttctattcaaaagtgttttaaaatttgtttgtgattg 35097216  T
Q  581 tgacatgacatgttaaggtttctaactctaatgtgattgtgattgtgattgaggctgcatcaataatcatcattttggataatgattctaacaaaaatcc 680  Q
    ||||||||||||||||||||| |||||||||      |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35097217 tgacatgacatgttaaggtttgtaactctaa------tgtgattgcgattgaggctgaatcaataatcatcattttggataatgattctaacaaaaatcc 35097310  T
Q  681 attttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaattccatttttcctagaattaagctcttcctta 780  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35097311 attttggggctataataataatttttattctcaaataatatcagagtattttgccatcatcgtggaaattccattttttctagaattaagctcttcctta 35097410  T
Q  781 gaggagacagaaatcataaaatctttttgccataactttctaaaagaaaaacaaatcatttatac---nnnnnnnngggataaaaattaattactttttt 877  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||            |||||||||||||||||||||||    
T  35097411 gaggaggtagaaatcataaaatctttttgccataactttctaaaagaaaaacaaatca-ttatacttttttttttttggataaaaattaattactttttt 35097509  T
Q  878 caggtggagaacatcttggttattggacatagtcgctggcggcggaatctc-aggcttatgagtcatccagagga 951  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  35097510 caggtggagaacatcttggttattggacatagtcgct-gcggcggaatctcaaggcttatgaatcatccagagga 35097583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 281 - 577
Target Start/End: Original strand, 35110159 - 35110452
Alignment:
Q  281 cttgttccgactctcgagtgagtccctctgttatcctcaactttcaacctggtgaagctttcttggttcgaaacattgctaacatggtccctccatttaa 380  Q
    ||||||| |||||| |||||||||||||| ||||||| |||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||    
T  35110159 cttgttctgactctagagtgagtccctctattatcctgaactttcaacctggagaagctttcatggtccgaaacattgctaacatggtccctccatttaa 35110258  T
Q  381 tcaggtctaattcactgtttttctaaacaaatgaattgctatatatgatatacacattattgaagaatttttaataattaactttctattccacagttac 480  Q
    ||||||||| |||||| |||||||||| ||||||||| |||||  ||||||||||||||||||||| |||||||||||||| |||||||||||||||||     
T  35110259 tcaggtctacttcactatttttctaaagaaatgaatttctata--tgatatacacattattgaagagtttttaataattaaatttctattccacagttaa 35110356  T
Q  481 gatacagtggagttggtgcaacccttgagtatgctattacagctctaaaggtaagtgattagcttctattcaaaagtgttttaaaatttgtttgtga 577  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | |||| | ||||||||||||| || |||||    
T  35110357 gatacagtggagttggtgcaacccttgagtatgctattacagctctaaaggtaa-tgtttagcttttgttcatatgtgttttaaaattagtgtgtga 35110452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 35096646 - 35096836
Alignment:
Q  8 caaattccatttgcatcaccctaaaatattcattagtgttaatttattttataataagttctcctttcatcaattttaaaattggaaaattgaattcatg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35096646 caaattccatttgcatcaccctaaaatattcattagtgttaatttattttataataagttctcctttcatcaattttaaaattggaaaattgaattcatg 35096745  T
Q  108 cattcttccttttatatatggcagcaagaacccggaactgtatgatcgacttgctaaaggccagtctcccaaggtgattaattattagatc 198  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35096746 catgcttccttttatatatggcagcaagaacccggaactgtatgatcgacttgctaaaggccagtctcccaaggtgattaattattagatc 35096836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 289 - 586
Target Start/End: Original strand, 35102818 - 35103116
Alignment:
Q  289 gactctcgagtgagtccctctgttatcctcaactttcaacctggtgaagctttcttggttcgaaacattgctaacatggtccctccatttaatcaggtct 388  Q
    |||||| |||||||||||||| ||||||| |||||||||| ||| ||||||||| |||| |||||||||||||||||||||||| |||||||||||||||    
T  35102818 gactctagagtgagtccctctattatcctgaactttcaacatggagaagctttcatggtccgaaacattgctaacatggtccctacatttaatcaggtct 35102917  T
Q  389 aattcactgtttttctaaacaaatgaattgctatatatgatataca---cattattgaagaatttttaataattaactttctattccacagttacgatac 485  Q
    | ||||||||||||||||||||||||||||  |||||||||||| |    ||||||||||| |||||||||||||| ||||||||||||||||| ||||     
T  35102918 acttcactgtttttctaaacaaatgaattg--atatatgatatataaattattattgaagagtttttaataattaaatttctattccacagttaagatat 35103015  T
Q  486 agt-ggagttggtgcaacccttgagtatgctattacagctctaaaggtaagtgattagcttctattcaaaagtgttttaaaatttgtttgtgattgtgac 584  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||| || || ||||||||||| ||||||||||||||||||| |||| ||||||    
T  35103016 agtgggagttggtgcaacccttgagtatgcaattacagctctaaaggtaa-tgtttcgcttctattcataagtgttttaaaatttgttcgtgaatgtgac 35103114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 649 - 805
Target Start/End: Original strand, 13234435 - 13234591
Alignment:
Q  649 atcattttggataatgattctaacaaaaatccattttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaa 748  Q
    ||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||    
T  13234435 atcatttcggctaatgattctaacaaaaatccattttggggctataataataatttttattctcaaataatatcagagggttttgccatcgtggtggaaa 13234534  T
Q  749 ttccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 805  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13234535 ttccatttttcctagaattaagctcttccttagaggaggcagaaatcataaaatctt 13234591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 856 - 951
Target Start/End: Original strand, 35110572 - 35110667
Alignment:
Q  856 gataaaaattaattacttttttcaggtggagaacatcttggttattggacatagtcgctggcggcggaatctc-aggcttatgagtcatccagagga 951  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||||    
T  35110572 gataaaaatcaattacctttttcaggtggagaacatcttggttattggacatagtcgct-gcggcggtatatcaaggcttatgagtcatccagagga 35110667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 35109965 - 35110057
Alignment:
Q  101 attcatgcattcttccttttatatatggcagcaagaacccggaactgtatgatcgacttgctaaaggccagtctcccaaggtgattaattatt 193  Q
    |||||| ||| |||||||||||||||| ||||||| ||| | || |||||||||||||||||||||| || || |||||||||||||||||||    
T  35109965 attcattcatgcttccttttatatatgacagcaaggaccggaaattgtatgatcgacttgctaaaggacaatcccccaaggtgattaattatt 35110057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 855 - 937
Target Start/End: Original strand, 35103222 - 35103304
Alignment:
Q  855 ggataaaaattaattacttttttcaggtggagaacatcttggttattggacatagtcgctggcggcggaatctc-aggcttatg 937  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  35103222 ggataaaaattaattaatatttttaggtggagaacatcttggttattggacatagtcgct-gcggtggaatctcaaggcttatg 35103304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 51830955 - 51831015
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  51830955 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 51831015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 20551442 - 20551382
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||  ||||||||||||    
T  20551442 tcgtggaaattccatttttcctagaattaagcttttccttagagtaggtagaaatcataaa 20551382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 743 - 800
Target Start/End: Original strand, 38441599 - 38441656
Alignment:
Q  743 tggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    |||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  38441599 tggaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 38441656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 743 - 800
Target Start/End: Original strand, 40811368 - 40811425
Alignment:
Q  743 tggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    |||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  40811368 tggaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 40811425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 743 - 800
Target Start/End: Original strand, 40816268 - 40816325
Alignment:
Q  743 tggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    |||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  40816268 tggaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 40816325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 743 - 800
Target Start/End: Original strand, 42344723 - 42344780
Alignment:
Q  743 tggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    |||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  42344723 tggaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 42344780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 6117114 - 6117054
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||  ||||||||||||    
T  6117114 tcgtggaaattttatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 6117054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 10266106 - 10266166
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||  || |||||||||    
T  10266106 tcgtggaaattccaattttcctagaattaagcttttccttagaggaggtagtaatcataaa 10266166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 7e-64; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 649 - 805
Target Start/End: Original strand, 18302269 - 18302425
Alignment:
Q  649 atcattttggataatgattctaacaaaaatccattttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaa 748  Q
    ||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||    
T  18302269 atcatttcggctaatgattctaacaaaaatccattttggggctataataataatttttattctcaaataatatcagagggttttgccatcgtggtggaaa 18302368  T
Q  749 ttccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 805  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18302369 ttccatttttcctagaattaagctcttccttagaggaggcagaaatcataaaatctt 18302425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 744 - 805
Target Start/End: Original strand, 18032080 - 18032141
Alignment:
Q  744 ggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 805  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  18032080 ggaaattccattttttctagaattaagctcttccttagaggaggcagaaatcataaaatctt 18032141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 727 - 805
Target Start/End: Complemental strand, 48851490 - 48851412
Alignment:
Q  727 gattttgccatcatcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 805  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||||  ||||||||    
T  48851490 gatttttccatcatcgtgaaaatttcatttttcctagaattaagctcttccttagaggaggctgaaatctcaaaatctt 48851412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 29323189 - 29323129
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||    
T  29323189 tcgtggaaattccatttttcctagaattaagcttttccttagaggaagtagaaatcataaa 29323129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 49626379 - 49626319
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||  ||||||||||||    
T  49626379 tcgtggaaattccatttttcctagaattaagtttttccttagaggaggtagaaatcataaa 49626319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 31068193 - 31068133
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||  ||||||||||||    
T  31068193 tcgtggaaatttcatttttcctagaattaagcttttccctagaggaggtagaaatcataaa 31068133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 2e-61; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 649 - 805
Target Start/End: Complemental strand, 6944821 - 6944665
Alignment:
Q  649 atcattttggataatgattctaacaaaaatccattttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaa 748  Q
    ||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| | | |||||    
T  6944821 atcatttcggctaatgattctaacaaaaatccattttggggctataataataatttttattctcaaataatatcagagggttttgccatcgtgggggaaa 6944722  T
Q  749 ttccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 805  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6944721 ttccatttttcctagaattaagctcttccttagaggaggcagaaatcataaaatctt 6944665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 660 - 805
Target Start/End: Complemental strand, 5268472 - 5268327
Alignment:
Q  660 taatgattctaacaaaaatccattttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaattccatttttc 759  Q
    |||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||||||| |||||||||| || |||||||||||||||||    
T  5268472 taatgattctaacaaaaatccatttttgggctataataagaatttttattctcaaataatatcagagggttttgccatcgtcatggaaattccatttttc 5268373  T
Q  760 ctagaattaagctcttccttagaggagacagaaatcataaaatctt 805  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  5268372 ctagaattaagctcttccttagaggaggcagaaatcataaaatctt 5268327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 649 - 749
Target Start/End: Original strand, 48942841 - 48942941
Alignment:
Q  649 atcattttggataatgattctaacaaaaatccattttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaa 748  Q
    ||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||    
T  48942841 atcatttcggctaatgattctaacaaaaatccattttggggctataataataatttttattctcaaataatatcagagggttttgccatcgtggtggaaa 48942940  T
Q  749 t 749  Q
    |    
T  48942941 t 48942941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 729 - 805
Target Start/End: Complemental strand, 30129219 - 30129143
Alignment:
Q  729 ttttgccatcatcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 805  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| | ||||||| ||||||||    
T  30129219 ttttgccatcatcatggaaattcaatttttcctagaattaagatcttccttagaggaggctgaaatcacaaaatctt 30129143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 12173200 - 12173140
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  12173200 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 12173140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 21908132 - 21908192
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  21908132 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 21908192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 3223648 - 3223708
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||||    
T  3223648 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagtaatcataaa 3223708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 29104982 - 29105042
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  29104982 tcgtggaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 29105042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 21981971 - 21982031
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||  |||||| |||||    
T  21981971 tcgtggaaattccatttttcctagaattatgcttttccttagaggaggtagaaattataaa 21982031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 729 - 769
Target Start/End: Complemental strand, 41932641 - 41932601
Alignment:
Q  729 ttttgccatcatcgtggaaattccatttttcctagaattaa 769  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  41932641 ttttgccatcattgtggaaattccatttttcctagaattaa 41932601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 37080387 - 37080448
Alignment:
Q  740 tcgtggaaattccatttttc-ctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||  ||||||| ||||    
T  37080387 tcgtggaaattccatttttttctagaattaagcttttccttagaggaggtagaaatcctaaa 37080448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 5e-43; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 680 - 805
Target Start/End: Complemental strand, 8768698 - 8768573
Alignment:
Q  680 cattttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaattccatttttcctagaattaagctcttcctt 779  Q
    |||||||||| |||||||| |||||||||||| ||||||||||| ||| |||||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  8768698 cattttggggctataataagaatttttattctcaaataatatcaaagggttttgccatcgtggtggaaattccattttttctagaattaagctcttcctt 8768599  T
Q  780 agaggagacagaaatcataaaatctt 805  Q
    ||||||| ||||||||||||||||||    
T  8768598 agaggaggcagaaatcataaaatctt 8768573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 754 - 805
Target Start/End: Original strand, 42913065 - 42913116
Alignment:
Q  754 tttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 805  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42913065 tttttcctagaattaagctcttccttagaggaggcagaaatcataaaatctt 42913116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 19392130 - 19392190
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||||    
T  19392130 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagtaatcataaa 19392190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 1553466 - 1553406
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||| |||||||||||||||||| || |||||||||||||  ||||||||||||    
T  1553466 tcgtggaaatttcatttttcctagaattaaacttttccttagaggaggtagaaatcataaa 1553406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 740 - 799
Target Start/End: Original strand, 12318112 - 12318171
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataa 799  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||  || ||||||||    
T  12318112 tcgtggaaatttcatttttcctagaattaagcttttccttagaggaggtagtaatcataa 12318171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 35467049 - 35466989
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||||| ||||| | |||||  |||| |||||||    
T  35467049 tcgtggaaattccatttttcctagaattaagcttttcctcaaaggaggtagaattcataaa 35466989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 652 - 694
Target Start/End: Complemental strand, 37241932 - 37241890
Alignment:
Q  652 attttggataatgattctaacaaaaatccattttggggttata 694  Q
    ||||||| |||||||||||||||||||||||||||||| ||||    
T  37241932 attttggctaatgattctaacaaaaatccattttggggctata 37241890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 740 - 786
Target Start/End: Complemental strand, 38458518 - 38458472
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggag 786  Q
    ||||||||||||||||||||||| ||||||| | |||||||||||||    
T  38458518 tcgtggaaattccatttttcctaaaattaagtttttccttagaggag 38458472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 5685101 - 5685041
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    |||| |||||||||||||| ||||||||||||| ||| | |||||||  ||||||||||||    
T  5685101 tcgtagaaattccattttttctagaattaagcttttcttcagaggaggtagaaatcataaa 5685041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 661 - 805
Target Start/End: Original strand, 44511568 - 44511712
Alignment:
Q  661 aatgattctaacaaaaatccattttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaattccatttttcc 760  Q
    |||||||||||||||||||||||||| || |||||||| ||||||| | || ||||||||||||||  ||||| |||||||||||||||| ||||||| |    
T  44511568 aatgattctaacaaaaatccattttgaggctataataagaatttttgtcctcaaataatatcagagagttttgtcatcatcgtggaaatttcattttttc 44511667  T
Q  761 tagaattaagctcttccttagaggagacagaaatcataaaatctt 805  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||    
T  44511668 tagaattaagctcttccttagaggaggtagaaatcaaaaaatctt 44511712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 744 - 805
Target Start/End: Original strand, 37874715 - 37874776
Alignment:
Q  744 ggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 805  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  37874715 ggaaattccattttttctagaattaagctcttccttagaggaggcagaaatcataaaatctt 37874776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 39164475 - 39164415
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  39164475 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 39164415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 742 - 800
Target Start/End: Complemental strand, 35833937 - 35833879
Alignment:
Q  742 gtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  35833937 gtggaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 35833879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 742 - 785
Target Start/End: Complemental strand, 5156793 - 5156750
Alignment:
Q  742 gtggaaattccatttttcctagaattaagctcttccttagagga 785  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  5156793 gtggaaattccatttttcctagaattaagcttttccttagagga 5156750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 14709742 - 14709803
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagc-tcttccttagaggagacagaaatcataaa 800  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||  |||||| |||||    
T  14709742 tcgtggaaattccatttttcctagaattaagctttttccttagaggaggtagaaattataaa 14709803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 20912648 - 20912588
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||||  ||||||| ||||    
T  20912648 tcgtggaaatttcatttttcctagaattaagcttttcgttagaggaggtagaaatcttaaa 20912588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 42632385 - 42632444
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||| |||||| |||||||||| ||| |||||||||||||  ||||||||||||    
T  42632385 tcgtggaaatttcatttt-cctagaattatgcttttccttagaggaggtagaaatcataaa 42632444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 729 - 804
Target Start/End: Complemental strand, 20015356 - 20015281
Alignment:
Q  729 ttttgccatcatcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatct 804  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||||| |||||||    
T  20015356 ttttgccatcatcgtggaaattccatttttcctagaattaagctcttccttagtggaggttgaaatcacaaaatct 20015281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 8263504 - 8263444
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  8263504 tcgtggaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 8263444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 15232199 - 15232259
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||||    
T  15232199 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagtaatcataaa 15232259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 16291356 - 16291296
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||||    
T  16291356 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagtaatcataaa 16291296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 17202338 - 17202278
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||    
T  17202338 tcgtggaaattccatttttcctagaattaagcttttccttagtggaggtagaaatcataaa 17202278  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 1823973 - 1824033
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  1823973 tcgtgaaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 1824033  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 16028833 - 16028893
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    |||||||||||| |||||| ||||||||||||| |||||||||||||  ||||||||||||    
T  16028833 tcgtggaaattcaattttttctagaattaagcttttccttagaggaggtagaaatcataaa 16028893  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 698
Target Start/End: Complemental strand, 10986696 - 10986650
Alignment:
Q  652 attttggataatgattctaacaaaaatccattttggggttataataa 698  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||    
T  10986696 attttgggtaatgattctaacaaaaatccattttggggctataataa 10986650  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 16279918 - 16279858
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    |||||||||||||||| |||||||||||||| | |||||||||||||  || |||||||||    
T  16279918 tcgtggaaattccattattcctagaattaagtttttccttagaggaggtagtaatcataaa 16279858  T

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Target: chr6 (Bit Score: 55; Significance: 4e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 652 - 765
Target Start/End: Complemental strand, 14174625 - 14174511
Alignment:
Q  652 attttggataatgattctaacaaaaatccattttggggttataataataattttt-attcttaaataatatcagaggattttgccatcatcgtggaaatt 750  Q
    ||||||| |||||||||||||||||||  ||||||||| || ||||| ||||||| ||||| ||||||||| ||||  |||| | ||| |||||||||||    
T  14174625 attttggctaatgattctaacaaaaatatattttggggctagaataagaattttttattctcaaataatattagagtgtttttctatcgtcgtggaaatt 14174526  T
Q  751 ccatttttcctagaa 765  Q
    |||||||||||||||    
T  14174525 ccatttttcctagaa 14174511  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 652 - 765
Target Start/End: Complemental strand, 14179161 - 14179047
Alignment:
Q  652 attttggataatgattctaacaaaaatccattttggggttataataataattttt-attcttaaataatatcagaggattttgccatcatcgtggaaatt 750  Q
    ||||||| |||||||||||||||||||  ||||||||| || ||||| ||||||| ||||| ||||||||| ||||  |||| | ||| |||||||||||    
T  14179161 attttggctaatgattctaacaaaaatatattttggggctagaataagaattttttattctcaaataatattagagtgtttttctatcgtcgtggaaatt 14179062  T
Q  751 ccatttttcctagaa 765  Q
    |||||||||||||||    
T  14179061 ccatttttcctagaa 14179047  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 10130316 - 10130376
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||  ||||||||||||    
T  10130316 tcgtggaaattccatttttcctagaattaagcttttccttggaggaggtagaaatcataaa 10130376  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 26241831 - 26241891
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||   ||||||||||||    
T  26241831 tcgtggaaatttcatttttcctagaattaagcttttccttagaggaagtagaaatcataaa 26241891  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 742 - 800
Target Start/End: Original strand, 25312298 - 25312356
Alignment:
Q  742 gtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    |||||||||| ||||| ||| |||||||||| |||||||||||||  ||||||||||||    
T  25312298 gtggaaattctattttgccttgaattaagcttttccttagaggaggtagaaatcataaa 25312356  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 742 - 800
Target Start/End: Original strand, 26199792 - 26199850
Alignment:
Q  742 gtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    |||||||||| ||||| ||| |||||||||| |||||||||||||  ||||||||||||    
T  26199792 gtggaaattctattttgccttgaattaagcttttccttagaggaggtagaaatcataaa 26199850  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 742 - 784
Target Start/End: Complemental strand, 8483043 - 8483001
Alignment:
Q  742 gtggaaattccatttttcctagaattaagctcttccttagagg 784  Q
    |||||||||||||||||||||||||||| || || ||||||||    
T  8483043 gtggaaattccatttttcctagaattaaactttttcttagagg 8483001  T

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Target: chr5 (Bit Score: 46; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 743 - 800
Target Start/End: Original strand, 27426612 - 27426669
Alignment:
Q  743 tggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    |||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  27426612 tggaaattccatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 27426669  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 26720054 - 26719994
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  |||||| |||||    
T  26720054 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagaaattataaa 26719994  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 740 - 800
Target Start/End: Complemental strand, 26989800 - 26989740
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  |||||| |||||    
T  26989800 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagaaattataaa 26989740  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 1949375 - 1949435
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||| ||||||||||||| ||||||||||||| || ||||||||||  ||||||||||||    
T  1949375 tcgtgaaaattccattttttctagaattaagctttttcttagaggaggtagaaatcataaa 1949435  T

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Target: scaffold0017 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 740 - 800
Target Start/End: Original strand, 188899 - 188959
Alignment:
Q  740 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 800  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||   ||||||||||||    
T  188899 tcgtggaaattccatttttcctagaattatgcttttccttagaggaagtagaaatcataaa 188959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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