View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4708-Insertion-12 (Length: 212)
Name: NF4708-Insertion-12
Description: NF4708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4708-Insertion-12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 34519405 - 34519609
Alignment:
| Q |
8 |
ctaagtatccaatattatttgaaatttcatatccactgaaccactcaaaaatgaaactgtgttagtgatacttgatgatattgcgcaggactatggagta |
107 |
Q |
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| T |
34519405 |
ctaagtatccaatattatttgaaatttcatatccactgaaccactcaaaaatgaaactgtgttagtgatatttgatgatattgcgcaggactatggagta |
34519504 |
T |
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| Q |
108 |
accatacaactataccgtacaccatatttggtggatataattcagcaaggtgttggtagagtgcttacgctggactccataaatgctggtaaggcatgga |
207 |
Q |
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| T |
34519505 |
accatacaactataccgtacaccatatttggtggatataattcagcaaggtgttggtagagtgcttacgctggactccataaatgctggtaaggcatgga |
34519604 |
T |
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| Q |
208 |
ttgat |
212 |
Q |
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| T |
34519605 |
ttgat |
34519609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 55 - 206
Target Start/End: Original strand, 34507355 - 34507506
Alignment:
| Q |
55 |
aaaatgaaactgtgttagtgatacttgatgatattgcgcaggactatggagtaaccatacaactataccgtacaccatatttggtggatataattcagca |
154 |
Q |
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| T |
34507355 |
aaaatgaaactgtggtagtgatacttggtgacattgcgcagaactatggagtaaccatacaactataccgtacaccatatttggtggatataattcaaga |
34507454 |
T |
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| Q |
155 |
aggtgttggtagagtgcttacgctggactccataaatgctggtaaggcatgg |
206 |
Q |
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| T |
34507455 |
agatgttggtagagtgcttaccctggactctataaaagctggtaaagcatgg |
34507506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 4687275 - 4687217
Alignment:
| Q |
92 |
gcaggactatggagtaaccatacaactataccgtacaccatatttggtggatataattc |
150 |
Q |
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| T |
4687275 |
gcaggactatggagtaactatacaactttaccgcacaccttatttggtcgacataattc |
4687217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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