View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4708-Insertion-3 (Length: 730)
Name: NF4708-Insertion-3
Description: NF4708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4708-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 7 - 693
Target Start/End: Complemental strand, 20817664 - 20816976
Alignment:
| Q |
7 |
aataattgtgtgagaaaagtcatatcaggttttgtgggcaatttgnnnnnnnn---cgcgtccagaaattaagggacacgcggccagaaattaagggagc |
103 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| ||||||||||||| ||| |
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| T |
20817664 |
aataattgtgtgataaaagtcatatcaggttttgtaggcaatttgaaaaaaaaaaacgcgtccagaaattaaggcacacgcgtccagaaattaaggcagc |
20817565 |
T |
|
| Q |
104 |
acagaggatctcaaattcatactatggaattaagaaataaaaccctgaagtggtgctatagatcatgggaatgtgggggtatatcaactaaccattcacc |
203 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| |
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| T |
20817564 |
acagaggatctcaaattcatactatgcaattaagaaataaaaccctgaagtggtgctatagatcatggtaatgtggtgctatatcaactaaccattcacc |
20817465 |
T |
|
| Q |
204 |
acgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtgggccaggcaatttggtggatgc |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
20817464 |
acgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtggtccaggcaatttgatggatgc |
20817365 |
T |
|
| Q |
304 |
aagtatacttcctggttgtctttaactgtcaagtagcgtcctctctggtgatcaaaatgagcgcgctgcatgaaatatcctggtaggattgcctttctta |
403 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |||||||| |
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| T |
20817364 |
aagtatacttcctgcttgtctttaactgtcaagtagcgtcctctctgctgatcaaaatgagccacctgcatgaaatatcctgctagcattgtctttctta |
20817265 |
T |
|
| Q |
404 |
tgttgacgtagtaggggcgactattgaagtcagtgctgcataacttcagattaaaccgagccatgatacgcgctagctgttgtcgggcgttatcagcgga |
503 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| || |
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| T |
20817264 |
tgttgacgtagtagtggcgactattgaagtcagtgctgcataacttcagattaaaccgagccatgatacgcactagctgttgtcgaacattatcagctga |
20817165 |
T |
|
| Q |
504 |
tttcaacaccctagaattaatagagttg-cggagcaccaagaagcatcctcattg-gtgggttgtagggatgatagacattcaagagtgtgagatgatct |
601 |
Q |
| |
|
||||||||||||| |||||||| ||||| || ||||||||||||||||||| ||| | | ||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
20817164 |
tttcaacaccctataattaataaagttgtcgtagcaccaagaagcatcctcgttgttttgcttgtaggcatgatatacattcaagagtgtgagatgatct |
20817065 |
T |
|
| Q |
602 |
ccatcaacgtgtgcaaacctagctttcgcttcatccgcagctatctgtgcctgcttagggccggataaaagcaattggggtactgacagcat |
693 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| |||||||| ||||||||| ||||||||||||||| |
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| T |
20817064 |
ccatcaacgtgtataaacctagctttcgcttcatccgcagctatttgtgcctcctta-ggccggat-aaagcaatt-gggtactgacagcat |
20816976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 7e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 183 - 643
Target Start/End: Original strand, 33387622 - 33388081
Alignment:
| Q |
183 |
tatatcaactaaccattcaccacgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtgg |
282 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||| || |||||| || |
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|
| T |
33387622 |
tatatcaactaaccagtcaccacgtatatctgtcacagtacgtatgaaattgtcactcgtaaaaacatattcattatagataacccactcgggcttgggg |
33387721 |
T |
|
| Q |
283 |
gccaggcaatttggtggatgcaagtatacttcctggttgtctttaactgtcaagtagcgtcctctctggtgatcaaaatgagcgcgctgcatgaaatatc |
382 |
Q |
| |
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|||||||||||| ||||||||| | ||| |||||| ||||| |||||||||||| ||||| || | |||| |||||| ||||||||| |||| |
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| T |
33387722 |
tccaggcaatttgatggatgcaattgtaccatctggttatctttcactgtcaagtagtgtcctgtc---cgctcaagatgagccacctgcatgaagtatc |
33387818 |
T |
|
| Q |
383 |
ctggtaggattgcctttcttatgttgacgtagtaggggcgactattgaagtcagtgctgcataacttcagattaaaccgagccatgatacgcgctagctg |
482 |
Q |
| |
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||| ||| ||||||||| | |||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||| ||||||| |
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| T |
33387819 |
ctgctagcattgcctttttaatgttgacatagtagtcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctg |
33387918 |
T |
|
| Q |
483 |
ttgtcgggcgttatcagcggatttcaacaccctagaattaatagag-ttgcggagcaccaagaagcatcctcattg-gtgggttgtagggatgatagaca |
580 |
Q |
| |
|
|||||| | |||||||| ||||||| | |||| ||||| | || || | |||||||||| | |||||||||| | | ||||||| ||| || || |
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| T |
33387919 |
ttgtcgaacattatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacg |
33388018 |
T |
|
| Q |
581 |
ttcaagagtgtgagatgatctccatcaacgtgtgcaaacctagctttcgcttcatccgcagct |
643 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| |
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|
| T |
33388019 |
ttcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagct |
33388081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 7e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 314 - 553
Target Start/End: Original strand, 38778276 - 38778513
Alignment:
| Q |
314 |
cctggttgtctttaactgtcaagtagcgtcctctctggtgatcaaaatgagcgcgctgcatgaaatatcctggtaggattgcctttcttatgttgacgta |
413 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | | ||| |||||| ||||||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
38778276 |
cctggttgtctttaactgtcaagtagtgtcctgtccgct---caagatgagccacctgcatgaaatatcctgctaacattgcctttcttatgttgacgta |
38778372 |
T |
|
| Q |
414 |
gtaggggcgactattgaagtcagtgctgcataacttcagattaaaccgagccatgatacgcgctagctgttgtcgggcgttatcagcggatttcaacacc |
513 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| | |||||||| ||||| | | || |
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|
| T |
38778373 |
gtagtcgcgactattgaagtcagtgctgcataacttcaggttaaacctagccatgatacgcactagctgttgtcgaacattatcagctgatttaagcgcc |
38778472 |
T |
|
| Q |
514 |
ctagaattaatagagttg-cggagcaccaagaagcatcctc |
553 |
Q |
| |
|
||| ||||| ||||| || ||||||||||||||||||| |
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| T |
38778473 |
ctattattaacgaagttgtcgtagcaccaagaagcatcctc |
38778513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 38778045 - 38778158
Alignment:
| Q |
194 |
accattcaccacgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtgggccaggcaatt |
293 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||| |||| ||||| |
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| T |
38778045 |
accattcaccacgaatatctgtcacagtacgtatgaaattccgactcgtaagaacatattcattgtagataacccactcgggcttgtggtccagacaatt |
38778144 |
T |
|
| Q |
294 |
tggtggatgcaagt |
307 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
38778145 |
tgatggatgcaagt |
38778158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 563 - 680
Target Start/End: Original strand, 38778630 - 38778745
Alignment:
| Q |
563 |
ttgtagggatgatagacattcaagagtgtgagatgatctccatcaacgtgtgcaaacctagctttcgcttcatccgcagctatctgtgcctgcttagggc |
662 |
Q |
| |
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||||||| ||| || ||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| | ||||||| | || ||| |
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|
| T |
38778630 |
ttgtaggcatggtatacattcaagagtgtgagatgatctccatcaatgtgtccaaacctagctttggcttcatccgcagctttttgtgcctcccta-ggc |
38778728 |
T |
|
| Q |
663 |
cggataaaagcaattggg |
680 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
38778729 |
cggat-aaagcaattggg |
38778745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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