View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4708-Insertion-4 (Length: 590)

Name: NF4708-Insertion-4
Description: NF4708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4708-Insertion-4
NF4708-Insertion-4
[»] chr5 (7 HSPs)
chr5 (237-590)||(14547944-14548297)
chr5 (8-174)||(14547749-14547924)
chr5 (69-211)||(554311-554462)
chr5 (80-150)||(41144674-41144744)
chr5 (154-211)||(29557553-29557610)
chr5 (93-135)||(967574-967616)
chr5 (109-150)||(10523682-10523723)
[»] chr3 (5 HSPs)
chr3 (80-150)||(47006594-47006664)
chr3 (73-147)||(19961125-19961199)
chr3 (80-118)||(18029986-18030024)
chr3 (80-150)||(25134180-25134250)
chr3 (80-145)||(25096280-25096345)
[»] chr8 (7 HSPs)
chr8 (80-148)||(31313305-31313373)
chr8 (80-150)||(5493379-5493449)
chr8 (80-155)||(41602403-41602478)
chr8 (82-147)||(8867182-8867247)
chr8 (156-199)||(13949029-13949072)
chr8 (80-150)||(6530304-6530374)
chr8 (93-155)||(21372454-21372516)
[»] chr1 (4 HSPs)
chr1 (80-148)||(1035566-1035634)
chr1 (80-199)||(11017977-11018105)
chr1 (154-211)||(16583236-16583293)
chr1 (80-148)||(8644788-8644856)
[»] chr2 (9 HSPs)
chr2 (80-147)||(20061151-20061218)
chr2 (80-150)||(3348294-3348364)
chr2 (154-230)||(15079909-15079985)
chr2 (85-150)||(32294603-32294668)
chr2 (80-150)||(7743818-7743888)
chr2 (80-150)||(44068875-44068945)
chr2 (85-150)||(7061527-7061592)
chr2 (109-150)||(30549086-30549127)
chr2 (80-148)||(14275754-14275821)
[»] chr7 (3 HSPs)
chr7 (80-150)||(32786788-32786858)
chr7 (80-210)||(32546704-32546843)
chr7 (154-191)||(31399359-31399396)
[»] chr4 (7 HSPs)
chr4 (80-211)||(27918359-27918499)
chr4 (80-137)||(564217-564274)
chr4 (80-150)||(14138973-14139043)
chr4 (80-118)||(29508640-29508678)
chr4 (80-145)||(28675783-28675848)
chr4 (81-150)||(45249983-45250052)
chr4 (79-139)||(20537407-20537467)
[»] chr6 (3 HSPs)
chr6 (80-134)||(16126155-16126209)
chr6 (80-135)||(11659253-11659308)
chr6 (154-200)||(3787509-3787555)


Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 237 - 590
Target Start/End: Original strand, 14547944 - 14548297
Alignment:
Q  237 ctaaggacataagttaccgtcacccaaactttaattatatagattttattttggttttatccattctagaatataagttaacaattcccataccgatttg 336  Q
    ||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14547944 ctaaggacagaagttaacatcacccaaactttaattatatagattttattttggttttatcgattctagaatataagttaacaattcccataccgatttg 14548043  T
Q  337 ccgattatggaagctggcacaagatgtattaaattaaatatatcaattttgaaagaatattttatgctgtaaagcatggtcactggtcaggttggttatg 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14548044 ccgattatggaagctggcacaagatgtattaaattaaatatatcaattttgaaagaatattttatgctgtaaagcatggtcactggtcaggttggttatg 14548143  T
Q  437 atttgaaaatattgttgtttatgtttgaaagtacaaattaccttttcagtttttagctgtgctgttttaattagttaattagtactttagagtttagact 536  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14548144 atttgaaaatattgttgtttatgtttgaaagtacaaattaccttttcagtttttagctgtgatgttttaattagttaattagtactttagagtttagact 14548243  T
Q  537 gcatcatagacggattctccttcatcatccctttcacaaatataaattcgtaat 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14548244 gcatcatagacggattctccttcatcatccctttcacaaatataaattcgtaat 14548297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 14547749 - 14547924
Alignment:
Q  8 ttacacatgcattttgactcacatgcatatgtgattatatttaattttgtagttatatataaattttaagaaaaatgttaacttatgccctcaagggtac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||    
T  14547749 ttacacatgcattttgactcacatgcatatgtgattatatttatttttgtagttatatataaattttaaggcaaatgttaacttatgccctcaagggcac 14547848  T
Q  108 ttgttaaggaattccttatagaaatatacgcatcaaaagtcg---------tttattaaaagttaaattatcatat 174  Q
     |||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||    
T  14547849 atgttaaggaattccttatagaaatatacgcatcaaaagtcgtgcagttaatttattaaaagttaaattatcatat 14547924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 69 - 211
Target Start/End: Complemental strand, 554462 - 554311
Alignment:
Q  69 aattttaagaaaaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt---------ttattaaaa 159  Q
    |||||||||| |||||||||||| | || ||||| | || |||||||||| || ||||||||||||| | || ||||| |||         || ||||||    
T  554462 aattttaagacaaatgttaacttttcccatcaagagcacatgttaaggaactcattatagaaatatatgtattaaaagccgtgcagtcaactttttaaaa 554363  T
Q  160 gttaaattatcatattttctaatataaaattgctcattttggatttcttaac 211  Q
    ||||||||||||||||||| |||  ||||||| |||||||||||||||||||    
T  554362 gttaaattatcatattttccaatgcaaaattgttcattttggatttcttaac 554311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 41144744 - 41144674
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt 150  Q
    |||||||| ||| || ||||||||| || |||||||||| || ||||||||||||||  ||||||||||||    
T  41144744 aaatgttatcttgtgtcctcaagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcgt 41144674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 29557553 - 29557610
Alignment:
Q  154 ttaaaagttaaattatcatattttctaatataaaattgctcattttggatttcttaac 211  Q
    ||||||||||||||||||| ||||| |||| ||| ||||||||||||| || ||||||    
T  29557553 ttaaaagttaaattatcatgttttccaatacaaagttgctcattttgggttccttaac 29557610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 967574 - 967616
Alignment:
Q  93 tgccctcaagggtacttgttaaggaattccttatagaaatata 135  Q
    |||||||||||| || ||||||||||||| |||||||||||||    
T  967574 tgccctcaagggcacatgttaaggaattcattatagaaatata 967616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 10523682 - 10523723
Alignment:
Q  109 tgttaaggaattccttatagaaatatacgcatcaaaagtcgt 150  Q
    |||||||||| || ||||||||||||||| ||||||||||||    
T  10523682 tgttaaggaactcattatagaaatatacgtatcaaaagtcgt 10523723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 47006594 - 47006664
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt 150  Q
    |||||||||||| |||||||||||| || |||||||||| |  |||||||||||| |||||||||||||||    
T  47006594 aaatgttaacttgtgccctcaagggcacatgttaaggaactttttatagaaatattcgcatcaaaagtcgt 47006664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 19961125 - 19961199
Alignment:
Q  73 ttaagaaaaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagt 147  Q
    |||||| ||||| |||||| |||||| |||| ||| |||||||||| |  ||||||||||||||| |||||||||    
T  19961125 ttaagacaaatgataacttgtgccctgaaggatacatgttaaggaactaattatagaaatatacgtatcaaaagt 19961199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 18029986 - 18030024
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaa 118  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  18029986 aaatgttaacttatgccctcaagggcacatgttaaggaa 18030024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 25134250 - 25134180
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt 150  Q
    |||||||||||| ||| ||||| |  || |||||||||| || ||||||||||||| | ||||||||||||    
T  25134250 aaatgttaacttgtgctctcaaagacacatgttaaggaactcattatagaaatatatgtatcaaaagtcgt 25134180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 25096280 - 25096345
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaa 145  Q
    |||| ||| ||| ||||||||| || || |||||||||| || |||||||||||||||||| ||||    
T  25096280 aaatattatcttgtgccctcaaaggcacatgttaaggaactcattatagaaatatacgcataaaaa 25096345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 31313305 - 31313373
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtc 148  Q
    ||||| |||||| |||||||||||| || |||||||||| || ||||||||||||||| ||||||||||    
T  31313305 aaatgctaacttgtgccctcaagggcacatgttaaggaagtcattatagaaatatacgtatcaaaagtc 31313373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 5493449 - 5493379
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt 150  Q
    ||||| |||||| |||||||||||| || ||||||| || || ||||||||||| ||||||||||||||||    
T  5493449 aaatgctaacttgtgccctcaagggcacatgttaagaaagtcattatagaaatacacgcatcaaaagtcgt 5493379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 41602403 - 41602478
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgtttatt 155  Q
    ||||| |||||| ||| ||||| || || ||||||||||||| |||||||||||||||||| |||| |||| ||||    
T  41602403 aaatgctaacttgtgctctcaacggcacatgttaaggaattcattatagaaatatacgcataaaaaatcgtgtatt 41602478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 8867182 - 8867247
Alignment:
Q  82 atgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagt 147  Q
    |||||||||| |||| | ||||| || |||||| ||| || |||||||||||||||||||||||||    
T  8867182 atgttaacttgtgccttgaagggcacatgttaaagaactcattatagaaatatacgcatcaaaagt 8867247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 13949029 - 13949072
Alignment:
Q  156 aaaagttaaattatcatattttctaatataaaattgctcatttt 199  Q
    ||||||||||||||||| |||| ||||||||| |||||||||||    
T  13949029 aaaagttaaattatcatgttttttaatataaagttgctcatttt 13949072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 6530304 - 6530374
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt 150  Q
    ||||| |||||| |||||||||||| || |||||||||| |  ||| ||||||||| |||| |||||||||    
T  6530304 aaatgctaacttgtgccctcaagggcacatgttaaggaacttattaaagaaatataagcataaaaagtcgt 6530374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 21372454 - 21372516
Alignment:
Q  93 tgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgtttatt 155  Q
    |||||||||||| |  |||||||||| |  |||||||||||||||||| ||||||||| ||||    
T  21372454 tgccctcaagggaatatgttaaggaacttattatagaaatatacgcataaaaagtcgtgtatt 21372516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 1035566 - 1035634
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtc 148  Q
    |||||||||||| |||||||||||| || |||||||||| || ||||||||||||||  ||||||||||    
T  1035566 aaatgttaacttgtgccctcaagggcacatgttaaggaactcattatagaaatatacatatcaaaagtc 1035634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 11018105 - 11017977
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt---------ttattaaaagttaaattatc 170  Q
    |||||||||||| ||| |||||||| || |||||||||| |  ||||||||||||||| || |||||||||         || |||||||||||||||||    
T  11018105 aaatgttaacttgtgctctcaagggcacatgttaaggaacttattatagaaatatacgtattaaaagtcgtgcagtcaacttcttaaaagttaaattatc 11018006  T
Q  171 atattttctaatataaaattgctcatttt 199  Q
    || ||||| |||  ||| |||||||||||    
T  11018005 atgttttccaatgcaaagttgctcatttt 11017977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 16583236 - 16583293
Alignment:
Q  154 ttaaaagttaaattatcatattttctaatataaaattgctcattttggatttcttaac 211  Q
    |||| |||||||||||||| ||||||||| |||| ||||||| |||||||| ||||||    
T  16583236 ttaatagttaaattatcatgttttctaatttaaagttgctcaatttggattccttaac 16583293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 8644856 - 8644788
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtc 148  Q
    |||||||||||| |||||||||||| || ||||||  || || |||||||||||||| ||| |||||||    
T  8644856 aaatgttaacttgtgccctcaagggcacatgttaataaactcattatagaaatatacacattaaaagtc 8644788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 20061218 - 20061151
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagt 147  Q
    |||||||||||| |||||||||||| || || ||||||| || ||||||||||||||| |||||||||    
T  20061218 aaatgttaacttgtgccctcaagggcacatgctaaggaactcattatagaaatatacgtatcaaaagt 20061151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 3348294 - 3348364
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt 150  Q
    ||||||||||||| ||||||||||| |  ||||||| |||||||||||||||||||   ||||||||||||    
T  3348294 aaatgttaacttaagccctcaagggcatatgttaagaaattccttatagaaatatattaatcaaaagtcgt 3348364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 15079909 - 15079985
Alignment:
Q  154 ttaaaagttaaattatcatattttctaatataaaattgctcattttggatttcttaaccagtgtcctaaggacacaa 230  Q
    |||||||||||| |||||||||||  ||| ||||||||||| |||| | |||||||||  ||||||| |||||||||    
T  15079909 ttaaaagttaaactatcatatttttcaatgtaaaattgctctttttaggtttcttaacacgtgtccttaggacacaa 15079985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 32294668 - 32294603
Alignment:
Q  85 ttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt 150  Q
    ||||||| |||||||||||| || |||||||||| || ||||||||||||| | || |||||||||    
T  32294668 ttaacttgtgccctcaagggcacatgttaaggaactcattatagaaatatatgtattaaaagtcgt 32294603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 7743888 - 7743818
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt 150  Q
    ||||||||||||||  ||||||| |||  |||||| ||| || ||||||||||||| ||||| ||||||||    
T  7743888 aaatgttaacttatatcctcaagtgtatatgttaaagaactcattatagaaatatatgcatcgaaagtcgt 7743818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 44068945 - 44068875
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt 150  Q
    ||||||||| || ||| ||||| |  || ||||||||||||| ||||||||||||| | ||||||||||||    
T  44068945 aaatgttaatttgtgctctcaaagacacatgttaaggaattcattatagaaatatatgtatcaaaagtcgt 44068875  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 7061527 - 7061592
Alignment:
Q  85 ttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt 150  Q
    |||||||||||||| ||| | || |||||| ||| |  ||||||||||||| ||||||||||||||    
T  7061527 ttaacttatgcccttaagagcacatgttaaagaacttattatagaaatatatgcatcaaaagtcgt 7061592  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 30549086 - 30549127
Alignment:
Q  109 tgttaaggaattccttatagaaatatacgcatcaaaagtcgt 150  Q
    |||||||||| || ||||||||||||||| ||||||||||||    
T  30549086 tgttaaggaactctttatagaaatatacgtatcaaaagtcgt 30549127  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 14275754 - 14275821
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtc 148  Q
    ||||| |||||| ||||| |||||| || | |||||||| || ||||||||||||||| ||||||||||    
T  14275754 aaatgctaacttgtgccc-caagggcacatattaaggaactcattatagaaatatacgtatcaaaagtc 14275821  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 32786788 - 32786858
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt 150  Q
    ||||| |||||| |||||||||||| || |||||||||| || ||||| ||||||||| ||||||||||||    
T  32786788 aaatgctaacttgtgccctcaagggcacatgttaaggaactcattatataaatatacgtatcaaaagtcgt 32786858  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 32546704 - 32546843
Alignment:
Q  80 aaatgttaacttatgccctc-aagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcg---------tttattaaaagttaaattat 169  Q
    |||||||||||| ||||||  ||||| ||  |||||  || ||||||||||||||||||||||||||||||          || ||||||||||||||||    
T  32546704 aaatgttaacttgtgccctttaagggcacacgttaaaaaactccttatagaaatatacgcatcaaaagtcgggcaatcaacttcttaaaagttaaattat 32546803  T
Q  170 catattttctaatataaaattgctcattttggatttcttaa 210  Q
    |||||||| ||||   |||||||||||||||| || |||||    
T  32546804 catattttttaat-gcaaattgctcattttgggttccttaa 32546843  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 31399359 - 31399396
Alignment:
Q  154 ttaaaagttaaattatcatattttctaatataaaattg 191  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  31399359 ttaaaagttaaactatcatattttttaatataaaattg 31399396  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 27918499 - 27918359
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt---------ttattaaaagttaaattatc 170  Q
    ||||| |||||| |||||||||||  || |||||||||| || ||||||||||||| | ||||||||||||         || |||||||||||| |||     
T  27918499 aaatgctaacttgtgccctcaaggacacatgttaaggaactcgttatagaaatatatgtatcaaaagtcgtgcattaaacttcttaaaagttaaaatatt 27918400  T
Q  171 atattttctaatataaaattgctcattttggatttcttaac 211  Q
    |||||||  |||  |||||||||| ||||||||| ||||||    
T  27918399 atatttttcaatgcaaaattgctctttttggattccttaac 27918359  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 564274 - 564217
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacg 137  Q
    |||||||||||| || |||||||||||| ||||||||| ||  |||||||||||||||    
T  564274 aaatgttaacttgtgtcctcaagggtacatgttaaggagtttattatagaaatatacg 564217  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 14138973 - 14139043
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt 150  Q
    |||||||||||| |||| ||||||| || |||||| |||  | ||||||||||||||| ||||||| ||||    
T  14138973 aaatgttaacttgtgccttcaagggcacatgttaatgaaccctttatagaaatatacgtatcaaaaatcgt 14139043  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 29508640 - 29508678
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaa 118  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  29508640 aaatgttaacttatgccctcaagggcacatgttaaggaa 29508678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 28675848 - 28675783
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaa 145  Q
    ||||| ||||||||| ||| ||||| || |||||||||| || ||||||||||||||  |||||||    
T  28675848 aaatgctaacttatgtccttaagggcacatgttaaggaagtcattatagaaatatacatatcaaaa 28675783  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 45250052 - 45249983
Alignment:
Q  81 aatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgcatcaaaagtcgt 150  Q
    ||||||||||| |||||||||||| || || |||| ||||  |||||||||||| |  ||||||||||||    
T  45250052 aatgttaacttgtgccctcaagggcacatgctaagaaattttttatagaaatattcatatcaaaagtcgt 45249983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 20537467 - 20537407
Alignment:
Q  79 aaaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatatacgca 139  Q
    |||||||||| || |||||||||||| |  |||||||||| || ||||| |||||||||||    
T  20537467 aaaatgttaatttgtgccctcaagggcatatgttaaggaactcattataaaaatatacgca 20537407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 16126209 - 16126155
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatat 134  Q
    |||||||||||| ||||||||| ||||| ||||||||||||| ||||| ||||||    
T  16126209 aaatgttaacttgtgccctcaatggtacatgttaaggaattcattataaaaatat 16126155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 11659253 - 11659308
Alignment:
Q  80 aaatgttaacttatgccctcaagggtacttgttaaggaattccttatagaaatata 135  Q
    ||||| ||||||||||||||||||| || |||||||||||   |||||||||||||    
T  11659253 aaatgctaacttatgccctcaagggaacatgttaaggaatatattatagaaatata 11659308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 3787509 - 3787555
Alignment:
Q  154 ttaaaagttaaattatcatattttctaatataaaattgctcattttg 200  Q
    |||||||||||| |||||| ||||||||| ||||||||||| |||||    
T  3787509 ttaaaagttaaactatcatgttttctaatgtaaaattgctctttttg 3787555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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