View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4708-Insertion-7 (Length: 477)

Name: NF4708-Insertion-7
Description: NF4708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4708-Insertion-7
NF4708-Insertion-7
[»] chr4 (1 HSPs)
chr4 (8-477)||(41468343-41468811)


Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Original strand, 41468343 - 41468811
Alignment:
Q  8 caagggcatggagattagatgtcatgtttctccactgagctacatagagcataaattctctcttaatcttcttctatgaaattgttgttttttattcgaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41468343 caagggcatggagattagatgtcatgtttctccactgagctacatagagcataaattctctcttaatcttcttctatgagattgttgttttttattcgaa 41468442  T
Q  108 gatgtctaatgttattcttctttttgcaagcattttctgtagcatggaaaaactgttgtatgtgtctgtctttaagtcataatgttttgtatcttagctt 207  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41468443 gatgtctaatgttattcttctttttgcaagcatt--------catggaaaaactgttgtatgtgtctgtctttaagtcataatgttttgtatcttagctt 41468534  T
Q  208 ctaataagagccctcctgaaacacaacacaagtgagcttatttctgatatacagaaaggattttaccaggttttcattactagtgtcacaatcgattcag 307  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41468535 ctaataagagtcctcctgaaacacaacacaagtgagtttatttctgatatacagaaaggattttaccaggttttcattactagtgtcacaatcgattcag 41468634  T
Q  308 tagcctcgtgaagttaaggacatgaactttactccaaaca-------cggtaataccatagcttagtctttcgagaatattcaaccatgggggtattatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  41468635 tagcctcgtgaagttaaggacatgaactttactccaaacattcatatcggtaataccatagcttagtctttcgagaatattcgaccaagggggtattatt 41468734  T
Q  401 tagagaaatgatatttcaacaatcttttgagacaataaaatggacaactcttgatttcaaaatttcacaacgatgga 477  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  41468735 tagagaaatgatatttcaacaatcttttgagacaattaaatggacaactcttgatttcaaaatttcgcaacgatgga 41468811  T

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