View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4708-Insertion-8 (Length: 420)

Name: NF4708-Insertion-8
Description: NF4708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4708-Insertion-8
NF4708-Insertion-8
[»] chr5 (5 HSPs)
chr5 (26-420)||(42290441-42290841)
chr5 (124-159)||(29823257-29823292)
chr5 (125-162)||(18942246-18942283)
chr5 (124-161)||(40143902-40143939)
chr5 (123-159)||(6273128-6273164)
[»] chr3 (8 HSPs)
chr3 (36-106)||(39851414-39851484)
chr3 (124-159)||(23241930-23241965)
chr3 (124-159)||(30465154-30465189)
chr3 (123-160)||(51537256-51537293)
chr3 (122-158)||(11412558-11412594)
chr3 (123-159)||(35054776-35054812)
chr3 (126-158)||(44832412-44832444)
chr3 (123-159)||(53351171-53351207)
[»] chr7 (7 HSPs)
chr7 (124-162)||(44606000-44606038)
chr7 (123-161)||(46170639-46170677)
chr7 (36-105)||(36098824-36098898)
chr7 (124-161)||(14802028-14802065)
chr7 (124-161)||(15249020-15249057)
chr7 (124-161)||(36858131-36858168)
chr7 (124-160)||(45269518-45269554)
[»] chr6 (5 HSPs)
chr6 (49-121)||(23596645-23596717)
chr6 (124-162)||(22351312-22351350)
chr6 (125-159)||(30426318-30426352)
chr6 (125-161)||(6817288-6817324)
chr6 (123-159)||(29419827-29419863)
[»] chr8 (8 HSPs)
chr8 (124-159)||(3655857-3655892)
chr8 (124-162)||(31008603-31008641)
chr8 (36-105)||(40484689-40484763)
chr8 (124-161)||(41726426-41726463)
chr8 (124-160)||(13487217-13487253)
chr8 (123-159)||(18656691-18656727)
chr8 (123-159)||(32493252-32493288)
chr8 (123-159)||(36833904-36833940)
[»] chr2 (6 HSPs)
chr2 (124-159)||(39061989-39062024)
chr2 (122-159)||(16106781-16106818)
chr2 (125-162)||(21800752-21800789)
chr2 (123-160)||(35305363-35305400)
chr2 (125-162)||(37256054-37256091)
chr2 (36-105)||(37485362-37485431)
[»] chr1 (6 HSPs)
chr1 (124-159)||(3355400-3355435)
chr1 (123-160)||(962562-962599)
chr1 (126-159)||(32364121-32364154)
chr1 (124-161)||(42866276-42866313)
chr1 (125-161)||(3252224-3252260)
chr1 (123-159)||(33690159-33690195)
[»] chr4 (5 HSPs)
chr4 (123-161)||(1936574-1936612)
chr4 (123-160)||(54822046-54822083)
chr4 (123-159)||(4414415-4414451)
chr4 (124-160)||(11792383-11792419)
chr4 (123-159)||(25232738-25232774)
[»] scaffold0116 (1 HSPs)
scaffold0116 (122-159)||(7839-7876)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 26 - 420
Target Start/End: Complemental strand, 42290841 - 42290441
Alignment:
Q  26 cagttcatttcatagttttaaaaaccggaccggacggtggaatcggtctgacagtgaaccggtgatatggccggttcgagtaacatctcggatcggttgc 125  Q
    ||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| |||    
T  42290841 cagttcatttcatagttttaaaaaccggaccggccggtcgaaccggtcggacagtgaactggtgatgtggccggttcgagtaacatcttggatcggctgc 42290742  T
Q  126 cgagtcgatgaccgagccggattttaaaactatggttcattttatcctcgatccatttaattcataggaaagcattaattcaattttggtgaaccaacat 225  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  42290741 cgagtcgatgaccgagccggattttaaaattacggttcattttatcctctgtccatttaattcatagggaagcattaattcaattttggtgaaccgacat 42290642  T
Q  226 tgcaaattcgt---tcgtattcattaaatttttcacgtcaaccgacc------tggaactttttcggctgtggaccatttttccctatatcacctctcta 316  Q
    |||||||||||   |||||||||||||||||||||||||||||| ||      ||||||||||||||||||||||||||||||||||||||| | |||||    
T  42290641 tgcaaattcgtggatcgtattcattaaatttttcacgtcaaccggcctcgatgtggaactttttcggctgtggaccatttttccctatatcatccctcta 42290542  T
Q  317 actagaaagattttctctctctttttatctaaataaatggtttctagtagacacttcttcatgaatcatgcatttcaaaagcatcataggaaagaataag 416  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  42290541 gctagaaagattttctctctctttttatctaaataaatggtttctagtagaca---cttcatgaatcatgcatttcaaaagcatcataggaaagaataag 42290445  T
Q  417 aaaa 420  Q
    ||||    
T  42290444 aaaa 42290441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 29823292 - 29823257
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||| ||||||||||||||    
T  29823292 gccgagtcgatgaccgagccgaattttaaaactatg 29823257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 18942283 - 18942246
Alignment:
Q  125 ccgagtcgatgaccgagccggattttaaaactatggtt 162  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  18942283 ccgagtcgatgaccgagccgagttttaaaactatggtt 18942246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 40143939 - 40143902
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatggt 161  Q
    |||||||||||||||||||||  |||||||||||||||    
T  40143939 gccgagtcgatgaccgagccgagttttaaaactatggt 40143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 6273164 - 6273128
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||||  |||||||||||||    
T  6273164 tgccgagtcgatgaccgagccgagttttaaaactatg 6273128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 39851484 - 39851414
Alignment:
Q  36 catagttttaaaaaccggaccggacggtggaatcggtctgacagtgaaccggtgatatggccggttcgagt 106  Q
    ||||||||||||||||||||||| |||| ||| ||||| ||| ||||||||||||  || |||||||||||    
T  39851484 catagttttaaaaaccggaccggccggttgaaccggtccgaccgtgaaccggtgaggtgaccggttcgagt 39851414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 23241930 - 23241965
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||| ||||||||||||||    
T  23241930 gccgagtcgatgaccgagccgaattttaaaactatg 23241965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 30465154 - 30465189
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30465154 gccgagtcgatgaccgagccgaattttaaaactatg 30465189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 51537256 - 51537293
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatgg 160  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  51537256 tgccgagtcgatgaccgagccgagttttaaaactatgg 51537293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 11412558 - 11412594
Alignment:
Q  122 ttgccgagtcgatgaccgagccggattttaaaactat 158  Q
    |||||||||||||||||||||||  ||||||||||||    
T  11412558 ttgccgagtcgatgaccgagccgagttttaaaactat 11412594  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 35054776 - 35054812
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||||  |||||||||||||    
T  35054776 tgccgagtcgatgaccgagccgagttttaaaactatg 35054812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 44832444 - 44832412
Alignment:
Q  126 cgagtcgatgaccgagccggattttaaaactat 158  Q
    ||||||||||||||||||| |||||||||||||    
T  44832444 cgagtcgatgaccgagccgaattttaaaactat 44832412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 53351207 - 53351171
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||||  |||||||||||||    
T  53351207 tgccgagtcgatgaccgagccgagttttaaaactatg 53351171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 44606000 - 44606038
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatggtt 162  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  44606000 gccgagtcgatgaccgagccgaattttaaaactatggtt 44606038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 46170677 - 46170639
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatggt 161  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  46170677 tgccgagtcgatgaccgagccgaattttaaaactatggt 46170639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 36098824 - 36098898
Alignment:
Q  36 catagttttaaaaaccggaccggac-----ggtggaatcggtctgacagtgaaccggtgatatggccggttcgag 105  Q
    |||||||||||||||||||||||||     ||| ||| ||||| ||| ||||||||||| | |||||||||||||    
T  36098824 catagttttaaaaaccggaccggaccggccggtcgaaccggtccgaccgtgaaccggtggtgtggccggttcgag 36098898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 14802028 - 14802065
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatggt 161  Q
    |||||||||||||||||||||  |||||||||||||||    
T  14802028 gccgagtcgatgaccgagccgagttttaaaactatggt 14802065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 15249020 - 15249057
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatggt 161  Q
    |||||||||||||||||||||  |||||||||||||||    
T  15249020 gccgagtcgatgaccgagccgagttttaaaactatggt 15249057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 36858168 - 36858131
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatggt 161  Q
    |||||||||||||||||||||  |||||||||||||||    
T  36858168 gccgagtcgatgaccgagccgagttttaaaactatggt 36858131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 45269518 - 45269554
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatgg 160  Q
    |||||||||||||||||||||  ||||||||||||||    
T  45269518 gccgagtcgatgaccgagccgagttttaaaactatgg 45269554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 23596717 - 23596645
Alignment:
Q  49 accggaccggacggtggaatcggtctgacagtgaaccggtgatatggccggttcgagtaacatctcggatcgg 121  Q
    ||||||||||||||| ||| ||||| ||| || || ||||||| ||||||||||||| ||||| | |||||||    
T  23596717 accggaccggacggtcgaaccggtccgaccgtaaatcggtgatgtggccggttcgagcaacatgttggatcgg 23596645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 22351312 - 22351350
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatggtt 162  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  22351312 gccgagtcgatgaccgagccgagttttaaaactatggtt 22351350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 30426352 - 30426318
Alignment:
Q  125 ccgagtcgatgaccgagccggattttaaaactatg 159  Q
    |||||||||||||||||||| ||||||||||||||    
T  30426352 ccgagtcgatgaccgagccgaattttaaaactatg 30426318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 6817324 - 6817288
Alignment:
Q  125 ccgagtcgatgaccgagccggattttaaaactatggt 161  Q
    ||||||||||||||||||||  |||||||||||||||    
T  6817324 ccgagtcgatgaccgagccgagttttaaaactatggt 6817288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 29419827 - 29419863
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||||  |||||||||||||    
T  29419827 tgccgagtcgatgaccgagccgagttttaaaactatg 29419863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 3655892 - 3655857
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||| ||||||||||||||    
T  3655892 gccgagtcgatgaccgagccgaattttaaaactatg 3655857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 31008603 - 31008641
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatggtt 162  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  31008603 gccgagtcgatgaccgaaccgaattttaaaactatggtt 31008641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 40484689 - 40484763
Alignment:
Q  36 catagttttaaaaaccggaccggac-----ggtggaatcggtctgacagtgaaccggtgatatggccggttcgag 105  Q
    |||||||||||||||||||||||||     ||| ||| ||||| ||| ||||||||||| | |||||||||||||    
T  40484689 catagttttaaaaaccggaccggaccggccggtcgaaccggtccgaccgtgaaccggtggtgtggccggttcgag 40484763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 41726426 - 41726463
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatggt 161  Q
    |||||||||||||||||||||  |||||||||||||||    
T  41726426 gccgagtcgatgaccgagccgagttttaaaactatggt 41726463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 13487217 - 13487253
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatgg 160  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  13487217 gccgattcgatgaccgagccgaattttaaaactatgg 13487253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 18656691 - 18656727
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||||  |||||||||||||    
T  18656691 tgccgagtcgatgaccgagccgagttttaaaactatg 18656727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 32493252 - 32493288
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||||  |||||||||||||    
T  32493252 tgccgagtcgatgaccgagccgagttttaaaactatg 32493288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 36833940 - 36833904
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||||  |||||||||||||    
T  36833940 tgccgagtcgatgaccgagccgagttttaaaactatg 36833904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 39061989 - 39062024
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||| ||||||||||||||    
T  39061989 gccgagtcgatgaccgagccgaattttaaaactatg 39062024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 16106781 - 16106818
Alignment:
Q  122 ttgccgagtcgatgaccgagccggattttaaaactatg 159  Q
    |||||||||||||||||||||||  |||||||||||||    
T  16106781 ttgccgagtcgatgaccgagccgagttttaaaactatg 16106818  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 21800752 - 21800789
Alignment:
Q  125 ccgagtcgatgaccgagccggattttaaaactatggtt 162  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  21800752 ccgagtcgatgaccgagccgagttttaaaactatggtt 21800789  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 35305363 - 35305400
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatgg 160  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  35305363 tgccgagtcgatgaccgagccgagttttaaaactatgg 35305400  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 37256054 - 37256091
Alignment:
Q  125 ccgagtcgatgaccgagccggattttaaaactatggtt 162  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  37256054 ccgagtcgatgaccgaaccggtttttaaaactatggtt 37256091  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 37485431 - 37485362
Alignment:
Q  36 catagttttaaaaaccggaccggacggtggaatcggtctgacagtgaaccggtgatatggccggttcgag 105  Q
    ||||||||||||||||||||||| |||| | | | ||| ||| | ||||||||| |||| ||||||||||    
T  37485431 catagttttaaaaaccggaccggtcggtcggaccagtcagaccgggaaccggtggtatgtccggttcgag 37485362  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 3355435 - 3355400
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||| ||||||||||||||    
T  3355435 gccgagtcgatgaccgagccgaattttaaaactatg 3355400  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 962562 - 962599
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatgg 160  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  962562 tgccgagtcgatgaccgagccgagttttaaaactatgg 962599  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 32364154 - 32364121
Alignment:
Q  126 cgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||| ||||||||||||||    
T  32364154 cgagtcgatgaccgagccgaattttaaaactatg 32364121  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 42866313 - 42866276
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatggt 161  Q
    |||||||||||||||||||||  |||||||||||||||    
T  42866313 gccgagtcgatgaccgagccgagttttaaaactatggt 42866276  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 3252260 - 3252224
Alignment:
Q  125 ccgagtcgatgaccgagccggattttaaaactatggt 161  Q
    ||||||||||||||||||||  |||||||||||||||    
T  3252260 ccgagtcgatgaccgagccgagttttaaaactatggt 3252224  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 33690195 - 33690159
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||||  |||||||||||||    
T  33690195 tgccgagtcgatgaccgagccgagttttaaaactatg 33690159  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 1936574 - 1936612
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatggt 161  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  1936574 tgccgagtcgatgaccgagtcgggttttaaaactatggt 1936612  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 54822083 - 54822046
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatgg 160  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  54822083 tgccgagtcgatgaccgagccgagttttaaaactatgg 54822046  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 4414451 - 4414415
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||||  |||||||||||||    
T  4414451 tgccgagtcgatgaccgagccgagttttaaaactatg 4414415  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 11792419 - 11792383
Alignment:
Q  124 gccgagtcgatgaccgagccggattttaaaactatgg 160  Q
    |||||||||||||||||||||  ||||||||||||||    
T  11792419 gccgagtcgatgaccgagccgagttttaaaactatgg 11792383  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 25232738 - 25232774
Alignment:
Q  123 tgccgagtcgatgaccgagccggattttaaaactatg 159  Q
    ||||||||||||||||||||||  |||||||||||||    
T  25232738 tgccgagtcgatgaccgagccgagttttaaaactatg 25232774  T

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Target: scaffold0116 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 7876 - 7839
Alignment:
Q  122 ttgccgagtcgatgaccgagccggattttaaaactatg 159  Q
    |||||||||||||||||||||||  |||||||||||||    
T  7876 ttgccgagtcgatgaccgagccgagttttaaaactatg 7839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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