View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4708-Insertion-9 (Length: 340)

Name: NF4708-Insertion-9
Description: NF4708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4708-Insertion-9
NF4708-Insertion-9
[»] chr5 (2 HSPs)
chr5 (8-276)||(5390029-5390297)
chr5 (302-338)||(5389974-5390010)
[»] chr7 (1 HSPs)
chr7 (73-150)||(12110265-12110342)
[»] chr1 (2 HSPs)
chr1 (73-126)||(1725223-1725276)
chr1 (73-150)||(10199496-10199573)
[»] chr3 (2 HSPs)
chr3 (108-151)||(34958268-34958311)
chr3 (75-145)||(50760521-50760591)
[»] chr2 (2 HSPs)
chr2 (73-148)||(28039422-28039497)
chr2 (73-150)||(4090254-4090331)
[»] chr8 (2 HSPs)
chr8 (84-150)||(926403-926469)
chr8 (77-150)||(34522144-34522217)
[»] chr4 (1 HSPs)
chr4 (84-150)||(53422278-53422344)


Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 5390297 - 5390029
Alignment:
Q  8 aaaataatgtataggctagtaaaaacaagctcaaaatataggattttagaacagagcctcataagaaacaacttaatttggagcttatagtataaacgcg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  5390297 aaaataatgtataggctagtaaaaacaagctcaaaatataggattttaaaacagagcctcataagaaacaacttaatttgcagcttatagcataaacgcg 5390198  T
Q  108 tatgaataaactatttctactacgcaagataaaataaagtcaaggtgtacttgcatgaagttgtaagttgttttcataaactataagttgtttttccact 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5390197 tatgaataaactatttctactacgcaagataaaataaagtcaaggtgtacttgcatgaagttgtaagttgttttcataaactataagttgtttttccact 5390098  T
Q  208 acatgaagtcttatgataaacaacttaattttcagtttactgcatatacgcttatgaacatatcataag 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5390097 acatgaagtcttatgataaacaacttaattttcagtttactgcatatacgcttatgaacatatcataag 5390029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 5390010 - 5389974
Alignment:
Q  302 cggatcatcccacaagttgtttacacaagttctcaca 338  Q
    |||||||||||||||||||||||||||||||||||||    
T  5390010 cggatcatcccacaagttgtttacacaagttctcaca 5389974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 12110265 - 12110342
Alignment:
Q  73 aaacaacttaatttggagcttatagtataaacgcgtatgaataaactatttctactacgcaagataaaataaagtcaa 150  Q
    ||||| ||||||||| | ||||||| |||| | | ||||||||| ||||||||| ||| |||||||||||||||||||    
T  12110265 aaacagcttaatttgcaacttatagcataagcacttatgaataacctatttctattacacaagataaaataaagtcaa 12110342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 1725276 - 1725223
Alignment:
Q  73 aaacaacttaatttggagcttatagtataaacgcgtatgaataaactatttcta 126  Q
    ||||||||||||||||||||||||| |||| |  ||||| ||||||||||||||    
T  1725276 aaacaacttaatttggagcttatagcataagcaggtatgtataaactatttcta 1725223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 10199573 - 10199496
Alignment:
Q  73 aaacaacttaatttggagcttatagtataaacgcgtatgaataaactatttctactacgcaagataaaataaagtcaa 150  Q
    |||||||||| |||| ||||||||| |||||| | |||  ||||  ||||||||  || |||||||||||||||||||    
T  10199573 aaacaacttattttgcagcttatagcataaacacttatagataagttatttctataacccaagataaaataaagtcaa 10199496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 34958268 - 34958311
Alignment:
Q  108 tatgaataaactatttctactacgcaagataaaataaagtcaag 151  Q
    |||||||||||||||||||  || ||||||||||||||||||||    
T  34958268 tatgaataaactatttctataacacaagataaaataaagtcaag 34958311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 50760521 - 50760591
Alignment:
Q  75 acaacttaatttggagcttatagtataaacgcgtatgaataaactatttctactacgcaagataaaataaa 145  Q
    |||||||| |||| ||||| ||||||||  || ||||||||| |||||||||  || ||||||||||||||    
T  50760521 acaacttattttgcagcttgtagtataagtgcttatgaataagctatttctatgactcaagataaaataaa 50760591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 28039497 - 28039422
Alignment:
Q  73 aaacaacttaatttggagcttatagtataaacgcgtatgaataaactatttctactacgcaagataaaataaagtc 148  Q
    ||||||||||||||| || |||||| |||| ||| ||||||||| ||||||    ||| |||||||||||||||||    
T  28039497 aaacaacttaatttgcagtttatagcataagcgcatatgaataagctattttggttacacaagataaaataaagtc 28039422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 4090254 - 4090331
Alignment:
Q  73 aaacaacttaatttggagcttatagtataaacgcgtatgaataaactatttctactacgcaagataaaataaagtcaa 150  Q
    |||||||||| |||| |||||| || ||||  | |||||||||| ||||||| |  || |||||||||||||||||||    
T  4090254 aaacaacttattttgaagcttaaagcataagggtgtatgaataagctatttccataacacaagataaaataaagtcaa 4090331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 926403 - 926469
Alignment:
Q  84 tttggagcttatagtataaacgcgtatgaataaactatttctactacgcaagataaaataaagtcaa 150  Q
    |||| |||| |||| |||| ||| ||||||||| |||||||||  || |||||||||||||||||||    
T  926403 tttgcagctaatagcataagcgcatatgaataagctatttctataacacaagataaaataaagtcaa 926469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 34522217 - 34522144
Alignment:
Q  77 aacttaatttggagcttatagtataaacgcgtatgaataaactatttctactacgcaagataaaataaagtcaa 150  Q
    |||||| |||| | |||| || |||| ||| ||||||||| |||||||||  || |||||||||||||||||||    
T  34522217 aacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaataaagtcaa 34522144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 53422278 - 53422344
Alignment:
Q  84 tttggagcttatagtataaacgcgtatgaataaactatttctactacgcaagataaaataaagtcaa 150  Q
    |||| ||||||||| |||| | | ||||||||| |||||||||| || |||||||||||||| ||||    
T  53422278 tttgcagcttatagcataagctcttatgaataagctatttctacaacacaagataaaataaattcaa 53422344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University