View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4708_low_1 (Length: 570)
Name: NF4708_low_1
Description: NF4708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4708_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 17 - 556
Target Start/End: Complemental strand, 8881150 - 8880612
Alignment:
| Q |
17 |
agatactttgagtttgggacgtttagtctatcagagtcnnnnnnnccctaattatgctgaaaaagaaaacaacacttcacactaaattaggcaaatctaa |
116 |
Q |
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| T |
8881150 |
agatactttgagtttgggacgtttagtctatcaaagtcaaaaa--ccctaattatgctgaaaaagaaaacaacacttcacactaaattaggcaaatctaa |
8881053 |
T |
|
| Q |
117 |
gtaaaaccaatggaaaaatgaaatgcatggaactaaaaaacgccttatacgacagaatagtagcttgtggaacactggaccgcgtgaatgggttaacaac |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8881052 |
gtaaaaccaatggaaaaatgtaatgcatggaactaaaaaacgccttatacgacagaatagtagcttgtggaacactggaccgcgcgaatgggttaacaac |
8880953 |
T |
|
| Q |
217 |
aatccaagaaaaaa-tcatcacacgcattggattcaagatatcttgcacatgctcgtctttattaagcctctacacaatttgagctaaaattgagttgaa |
315 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8880952 |
aatccaagaaaaaaatcatcacacacattggattcaagatatcttgcacatgctcgtctttattaagcctcttcacaatttgagctaaaattgagttgaa |
8880853 |
T |
|
| Q |
316 |
gattttgtgaaagatcttgattgtgagtcttgccaattaatgttcataaaaatggataatgtctttggcttttgaggctagctattaatgttccattttc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
8880852 |
gattttgtgaaagatcttgattgtgagtcttgccaattaatgttcataaaaatggataatgtctttggcttttgaggccagctattaatgtgccattttc |
8880753 |
T |
|
| Q |
416 |
tatagtatttcatatagatacgtggttataacttaaaataactaatacatagttatccaaatgtactatgttagataaatcagttgctaccgtccacact |
515 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8880752 |
tatagtatttcatatagatacgtggttataacttataataactaatacatagttatccaaatgtactatgttagataaatcagttgctaccgtccacaat |
8880653 |
T |
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| Q |
516 |
ttatcttaatcttatcatgaatgtcaactctataacattga |
556 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
8880652 |
ttatcttaatcttatcatgaatgtcaactctataacattga |
8880612 |
T |
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