View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4708_low_2 (Length: 313)
Name: NF4708_low_2
Description: NF4708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4708_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 31 - 292
Target Start/End: Complemental strand, 37604733 - 37604472
Alignment:
| Q |
31 |
gagaagaaatccgcaacttagcattaaccaattcagacggagcagataagttaatatggaaattcattaacaaagggcattatacagtgaagtctgcata |
130 |
Q |
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| T |
37604733 |
gagaagaaatccgcaacttagcattaaccaattcagacggagcagataagttaatatggaaattcattaacaaagggcattatacagcgaagtctgcata |
37604634 |
T |
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| Q |
131 |
catgtatgatatggaaactctcattgataatgtggagtatagaatgccgggagattggatgagaatgtggaatctgcacatacctcaacggatcaaagnn |
230 |
Q |
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| T |
37604633 |
catgtatgatatggaaactctcattcataatgtggagtatagaatgccgggagattggacgagaatgtggaatctgcacatacctcaacggatcaaagtt |
37604534 |
T |
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| Q |
231 |
nnnnnatggagtttgttgaggggtgtactcccttcgcatatatgagacttcaaggaaggggg |
292 |
Q |
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| T |
37604533 |
tttttatggaggttgttgaggggtgttctcccttcgcatatataagacttcaaggaaggggg |
37604472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 8178980 - 8178921
Alignment:
| Q |
169 |
atagaatgccgggagattggatgagaatgtggaatctgcacatacctcaacggatcaaag |
228 |
Q |
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| T |
8178980 |
atagagtgtcgggtgattggatgagaatgtggaatcttcatatacctcaaaggatcaaag |
8178921 |
T |
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