View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4709-Insertion-1 (Length: 910)

Name: NF4709-Insertion-1
Description: NF4709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4709-Insertion-1
NF4709-Insertion-1
[»] chr2 (5 HSPs)
chr2 (8-481)||(20538310-20538784)
chr2 (519-615)||(24014461-24014557)
chr2 (498-550)||(40465963-40466015)
chr2 (500-591)||(33705540-33705631)
chr2 (500-546)||(42104416-42104462)
[»] chr8 (4 HSPs)
chr8 (504-604)||(8637235-8637335)
chr8 (502-546)||(8637291-8637335)
chr8 (502-543)||(18587763-18587804)
chr8 (578-615)||(43473186-43473223)
[»] chr5 (6 HSPs)
chr5 (498-615)||(38462754-38462871)
chr5 (515-614)||(38462748-38462847)
chr5 (505-602)||(12272047-12272143)
chr5 (503-591)||(35549191-35549280)
chr5 (563-615)||(33456770-33456822)
chr5 (520-550)||(35549115-35549145)
[»] chr4 (9 HSPs)
chr4 (502-615)||(32298534-32298646)
chr4 (502-560)||(48597640-48597698)
chr4 (503-551)||(34648742-34648790)
chr4 (500-547)||(28632185-28632232)
chr4 (502-612)||(13777127-13777237)
chr4 (503-548)||(32048966-32049011)
chr4 (276-313)||(20015607-20015644)
chr4 (501-614)||(25048107-25048220)
chr4 (578-615)||(28632204-28632241)
[»] chr3 (4 HSPs)
chr3 (502-606)||(54881583-54881687)
chr3 (739-785)||(36424148-36424194)
chr3 (504-597)||(3513472-3513564)
chr3 (502-543)||(51838953-51838994)
[»] chr1 (3 HSPs)
chr1 (502-551)||(42950737-42950786)
chr1 (502-544)||(47920354-47920396)
chr1 (508-609)||(47920300-47920401)
[»] chr6 (1 HSPs)
chr6 (580-615)||(13320805-13320840)


Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 8 - 481
Target Start/End: Complemental strand, 20538784 - 20538310
Alignment:
Q  8 ttaaggctaaagaaattgcaaatcatcaagttctagtcatagaatgctatcatcaataaatccaaatttgtacatggtcaatgccaatgtcataactcaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20538784 ttaaggctaaagaaattgcaaatcatcaagttctagtcatagaatgctatcatcaataaatccaaatttgtacatggtcaatgccaatgtcataactcaa 20538685  T
Q  108 caacaagagctgggaa-catgaacaaaaccagtatcgttagaatgagaaataaaaggtttgaaatatcctccatattttccaaaaacaagaaggctgata 206  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20538684 caacaagagctgggaaacatgaacaaaaccagtatcgttagaatgagaaagaaaaggtttgaaatatcctccatattttccaaaaacaagaaggctgata 20538585  T
Q  207 gaagaatccaactattctgctgagaacaggttgacataaactaaatgttcaatcattaattttacctaggatatatgtaaatacatctggtgtaacataa 306  Q
    ||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20538584 gaagaatccaactattctgctgagaacaggttgacataaaccatattttcaatcattaattttacctaggatatatgtaaatacatctggtgtaacataa 20538485  T
Q  307 ttataccagaaacaaatctataattgaaaatgctgggcacacaggacaaatcattgaataattctaatgcaaacaaatgtgcagtagactgattgatatt 406  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||    
T  20538484 ttataccagaaacaaatctataattgaaaatgcagtgcacacaggacaaatcattgaataattctaatgcaaacaactgtgcactagactgattaatatt 20538385  T
Q  407 aactctcacataaatttggtgtcaatgtaacaagattattaattttttccacaagataatcccatctctatagtg 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20538384 aactctcacataaatttggtgtcaatgtaacaagattattaattttttccacaagataatcccatgtctatagtg 20538310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 519 - 615
Target Start/End: Complemental strand, 24014557 - 24014461
Alignment:
Q  519 gtgagtcaaacaaaattgatgtatttggttcaacgtttggtctgaatacatctactatttttgactcacttttgcttatattttgttacggagggag 615  Q
    |||||||||||||||| ||||||||||||||||  |||||||  |||||||| ||| | ||||| |||| |||||||||| ||||| ||| ||||||    
T  24014557 gtgagtcaaacaaaatggatgtatttggttcaaaatttggtccaaatacatcaactttctttgattcacctttgcttataatttgtaacgaagggag 24014461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 498 - 550
Target Start/End: Complemental strand, 40466015 - 40465963
Alignment:
Q  498 tgtaacaaaatataagtaaaagtgagtcaaacaaaattgatgtatttggttca 550  Q
    |||||||||||||||||||||| |||||||| ||| |||| ||||||| ||||    
T  40466015 tgtaacaaaatataagtaaaagcgagtcaaagaaatttgacgtatttgtttca 40465963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 591
Target Start/End: Original strand, 33705540 - 33705631
Alignment:
Q  500 taacaaaatataagtaaaagtgagtcaaacaaaattgatgtatttggttcaacgtttggtctgaatacatctactatttttgactcactttt 591  Q
    |||| ||||||||| |||| ||||| |||  |||||| ||||||| ||||||  |||||||  |||||||| ||| | ||||||||||||||    
T  33705540 taaccaaatataagcaaaaatgagttaaatgaaattggtgtatttagttcaaaatttggtcaaaatacatcaactttatttgactcactttt 33705631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 500 - 546
Target Start/End: Original strand, 42104416 - 42104462
Alignment:
Q  500 taacaaaatataagtaaaagtgagtcaaacaaaattgatgtatttgg 546  Q
    |||||||||||||| |||| ||||| ||| |||||||||||||||||    
T  42104416 taacaaaatataagcaaaaatgagtaaaaaaaaattgatgtatttgg 42104462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 504 - 604
Target Start/End: Original strand, 8637235 - 8637335
Alignment:
Q  504 aaaatataagtaaaagtgagtcaaacaaaattgatgtatttggttcaacgtttggtctgaatacatctactatttttgactcacttttgcttatattttg 603  Q
    |||||||||| || ||| ||||||| ||||||||| ||||||||||||  |||||||  |||||||| | | | ||||||||| ||||||||||||||||    
T  8637235 aaaatataagcaatagttagtcaaaaaaaattgatatatttggttcaaaatttggtccaaatacatcaattttctttgactcaattttgcttatattttg 8637334  T
Q  604 t 604  Q
    |    
T  8637335 t 8637335  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 502 - 546
Target Start/End: Complemental strand, 8637335 - 8637291
Alignment:
Q  502 acaaaatataagtaaaagtgagtcaaacaaaattgatgtatttgg 546  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||    
T  8637335 acaaaatataagcaaaattgagtcaaagaaaattgatgtatttgg 8637291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 543
Target Start/End: Complemental strand, 18587804 - 18587763
Alignment:
Q  502 acaaaatataagtaaaagtgagtcaaacaaaattgatgtatt 543  Q
    |||||||||||  ||||||| |||||||||||||||||||||    
T  18587804 acaaaatataaacaaaagtgtgtcaaacaaaattgatgtatt 18587763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 615
Target Start/End: Complemental strand, 43473223 - 43473186
Alignment:
Q  578 tttgactcacttttgcttatattttgttacggagggag 615  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  43473223 tttgacttagttttgcttatattttgttacggagggag 43473186  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 498 - 615
Target Start/End: Original strand, 38462754 - 38462871
Alignment:
Q  498 tgtaacaaaatataagtaaaagtgagtcaaacaaaattgatgtatttggttcaacgtttggtctgaatacatctactatttttgactcacttttgcttat 597  Q
    |||||||||||||||| ||||| |||||||| ||| |||| |||||| || |||  ||||| |  |||||||| ||| | |||||||||||||||  |||    
T  38462754 tgtaacaaaatataagcaaaagcgagtcaaagaaagttgaggtatttagtacaaaatttggacgaaatacatcaactttctttgactcacttttgagtat 38462853  T
Q  598 attttgttacggagggag 615  Q
    | |||||||| |||||||    
T  38462854 agtttgttaccgagggag 38462871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 38462847 - 38462748
Alignment:
Q  515 aaaagtgagtcaaacaaaattgatgtatttggttcaacgtttggtctgaatacatctactatttttgactcacttttgcttatattttgttacggaggga 614  Q
    |||||||||||||| ||| ||||||||||| || |||  ||||  || ||||| || ||| | |||||||| ||||||||||||||||||||| ||||||    
T  38462847 aaaagtgagtcaaagaaagttgatgtatttcgtccaaattttgtactaaatacctcaactttctttgactcgcttttgcttatattttgttacagaggga 38462748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 602
Target Start/End: Complemental strand, 12272143 - 12272047
Alignment:
Q  505 aaatataagtaaaagtgagtcaaacaaaattgatgtatttggttcaacgtttggtctgaatacatctactatttttgactcacttttgcttatatttt 602  Q
    ||||||||| |||| ||||||||| ||||| |||||||||| || ||  |||||||  ||||| || | | ||||||||||| |||||||||||||||    
T  12272143 aaatataagcaaaactgagtcaaataaaatagatgtatttgatttaaaatttggtccaaatacttcaatt-tttttgactcatttttgcttatatttt 12272047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 591
Target Start/End: Complemental strand, 35549280 - 35549191
Alignment:
Q  503 caaaatataagtaaaagtgagtcaaacaaaattgatgtatttggttcaacgtttggtctgaatacatctac-tatttttgactcactttt 591  Q
    ||||||||||  ||||  |||||||||||||||||||||||||||||||  ||| |||  ||| |||| || | ||||||||||||||||    
T  35549280 caaaatataaacaaaaacgagtcaaacaaaattgatgtatttggttcaaaatttagtccaaatgcatcaacttttttttgactcactttt 35549191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 563 - 615
Target Start/End: Complemental strand, 33456822 - 33456770
Alignment:
Q  563 aatacatctactatttttgactcacttttgcttatattttgttacggagggag 615  Q
    |||||||| ||| | ||||||| ||||||||| ||||||||||||||||||||    
T  33456822 aatacatcaactttctttgactaacttttgctcatattttgttacggagggag 33456770  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 550
Target Start/End: Complemental strand, 35549145 - 35549115
Alignment:
Q  520 tgagtcaaacaaaattgatgtatttggttca 550  Q
    |||||||||||||||||||||||||||||||    
T  35549145 tgagtcaaacaaaattgatgtatttggttca 35549115  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 502 - 615
Target Start/End: Complemental strand, 32298646 - 32298534
Alignment:
Q  502 acaaaatataagtaaaagtgagtcaaacaaaattgatgtatttggttcaacgtttggtctgaatacatctactatttttgactcacttttgcttatattt 601  Q
    |||||||||| | ||||||| ||| |||||||||||||||||||||||||  |||||||   ||||||| ||| | |||||| ||||||| | |||||||    
T  32298646 acaaaatatacgcaaaagtgggtccaacaaaattgatgtatttggttcaa-atttggtccacatacatcaactttctttgacacacttttacgtatattt 32298548  T
Q  602 tgttacggagggag 615  Q
    ||| |||| |||||    
T  32298547 tgtaacggggggag 32298534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 502 - 560
Target Start/End: Complemental strand, 48597698 - 48597640
Alignment:
Q  502 acaaaatataagtaaaagtgagtcaaacaaaattgatgtatttggttcaacgtttggtc 560  Q
    |||||||||||| ||||||| |||||| ||||||||||||||| |||||| ||||||||    
T  48597698 acaaaatataagcaaaagtgggtcaaataaaattgatgtattttgttcaaagtttggtc 48597640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 551
Target Start/End: Complemental strand, 34648790 - 34648742
Alignment:
Q  503 caaaatataagtaaaagtgagtcaaacaaaattgatgtatttggttcaa 551  Q
    ||||||||||| |||||||||||||| ||||||||||||||| ||||||    
T  34648790 caaaatataagaaaaagtgagtcaaataaaattgatgtatttagttcaa 34648742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 500 - 547
Target Start/End: Complemental strand, 28632232 - 28632185
Alignment:
Q  500 taacaaaatataagtaaaagtgagtcaaacaaaattgatgtatttggt 547  Q
    |||||||||||||| |||||||||||||| | ||||||||||||||||    
T  28632232 taacaaaatataagcaaaagtgagtcaaagagaattgatgtatttggt 28632185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 612
Target Start/End: Complemental strand, 13777237 - 13777127
Alignment:
Q  502 acaaaatataagtaaaagtgagtcaaacaaaattgatgtatttggttcaacgtttggtctgaatacatctactatttttgactcacttttgcttatattt 601  Q
    ||||||| |||| |||| ||||||| |||||||  |||||||| ||| ||  |||| ||  |||||||| |||   ||||||||||||||| ||||||||    
T  13777237 acaaaatgtaagcaaaattgagtcatacaaaatgaatgtattttgtttaaaatttgatccaaatacatcaacttactttgactcacttttgattatattt 13777138  T
Q  602 tgttacggagg 612  Q
    ||| |||||||    
T  13777137 tgtaacggagg 13777127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 548
Target Start/End: Complemental strand, 32049011 - 32048966
Alignment:
Q  503 caaaatataagtaaaagtgagtcaaacaaaattgatgtatttggtt 548  Q
    ||||||||| ||||||||||||||||||||||||| | ||||||||    
T  32049011 caaaatatatgtaaaagtgagtcaaacaaaattgacgaatttggtt 32048966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 20015607 - 20015644
Alignment:
Q  276 gatatatgtaaatacatctggtgtaacataattatacc 313  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  20015607 gatatatgtaaatacatttggtgtaacataactatacc 20015644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 501 - 614
Target Start/End: Original strand, 25048107 - 25048220
Alignment:
Q  501 aacaaaatataagtaaaagtgagtcaaacaaaattgatgtatttggttcaacgtttggtctgaatacatctactatttttgactcacttttgcttatatt 600  Q
    ||||||||||||| |||| ||||| ||| |||| || |||||||||| |||  ||||  |  |||||||| ||| | ||  ||||| |||||||||| ||    
T  25048107 aacaaaatataagcaaaaatgagtaaaagaaaagtggtgtatttggtacaaaatttgaaccaaatacatcaactttcttccactcatttttgcttatgtt 25048206  T
Q  601 ttgttacggaggga 614  Q
    |||||||| |||||    
T  25048207 ttgttacgaaggga 25048220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 615
Target Start/End: Original strand, 28632204 - 28632241
Alignment:
Q  578 tttgactcacttttgcttatattttgttacggagggag 615  Q
    |||||||||||||||||||||||||||||  |||||||    
T  28632204 tttgactcacttttgcttatattttgttagagagggag 28632241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 502 - 606
Target Start/End: Original strand, 54881583 - 54881687
Alignment:
Q  502 acaaaatataagtaaaagtgagtcaaacaaaattgatgtatttggttcaacgtttggtctgaatacatctactatttttgactcacttttgcttatattt 601  Q
    |||||||||||| |||||  | ||||||||||| |||||||||| |||||  ||| |||  |||||||| ||| | ||||||| ||||||| ||||||||    
T  54881583 acaaaatataagcaaaaggaaatcaaacaaaatagatgtatttgcttcaaaattttgtccaaatacatcaactttctttgacttacttttgtttatattt 54881682  T
Q  602 tgtta 606  Q
    |||||    
T  54881683 tgtta 54881687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 739 - 785
Target Start/End: Complemental strand, 36424194 - 36424148
Alignment:
Q  739 cttggatctgattagcctatcggtttgaaattcccaatccatgatat 785  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  36424194 cttggatctgattagcccatctgtttgaaattcccaatccatgatat 36424148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 504 - 597
Target Start/End: Complemental strand, 3513564 - 3513472
Alignment:
Q  504 aaaatataagtaaaagtgagtcaaacaaaattgatgtatttggttcaacgtttggtctgaatacatctactatttttgactcacttttgcttat 597  Q
    |||||||||| || || |||||||| | |||||| || ||||| ||||  |||||||  |||||||  ||| ||||||||||||||||||||||    
T  3513564 aaaatataagcaatagcgagtcaaaaataattgaggtgtttggctcaaaatttggtccaaatacata-actttttttgactcacttttgcttat 3513472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 543
Target Start/End: Complemental strand, 51838994 - 51838953
Alignment:
Q  502 acaaaatataagtaaaagtgagtcaaacaaaattgatgtatt 543  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||    
T  51838994 acaaaatataagtaaaagtgaatcaaataaaattgatatatt 51838953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 551
Target Start/End: Original strand, 42950737 - 42950786
Alignment:
Q  502 acaaaatataagtaaaagtgagtcaaacaaaattgatgtatttggttcaa 551  Q
    ||||||||||||||||||| | ||||||||  ||||||||||||||||||    
T  42950737 acaaaatataagtaaaagtaattcaaacaagtttgatgtatttggttcaa 42950786  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 502 - 544
Target Start/End: Complemental strand, 47920396 - 47920354
Alignment:
Q  502 acaaaatataagtaaaagtgagtcaaacaaaattgatgtattt 544  Q
    |||||| ||||||||| |||||||||| |||||||||||||||    
T  47920396 acaaaacataagtaaatgtgagtcaaataaaattgatgtattt 47920354  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 609
Target Start/End: Original strand, 47920300 - 47920401
Alignment:
Q  508 tataagtaaaagtgagtcaaacaaaattgatgtatttggttcaacgtttggtctgaatacatctactatttttgactcacttttgcttatattttgttac 607  Q
    |||||||||||||||||   ||||||||||||||||| ||| ||  |||  ||| |||||||| | | | |||||||||| ||| ||||| |||||| ||    
T  47920300 tataagtaaaagtgagttccacaaaattgatgtatttagtttaaaatttaatctaaatacatcaattttatttgactcacatttacttatgttttgtaac 47920399  T
Q  608 gg 609  Q
    ||    
T  47920400 gg 47920401  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 615
Target Start/End: Complemental strand, 13320840 - 13320805
Alignment:
Q  580 tgactcacttttgcttatattttgttacggagggag 615  Q
    ||||||| ||||||||||||||||||||||||||||    
T  13320840 tgactcatttttgcttatattttgttacggagggag 13320805  T

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